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T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
Compartmental models are the theoretical tool of choice for understanding single neuron computations. However, many models are incomplete, built ad hoc and require tuning for each novel condition rendering them of limited usability. Here, we present T2N, a powerful interface to control NEURON with M...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737656/ https://www.ncbi.nlm.nih.gov/pubmed/29165247 http://dx.doi.org/10.7554/eLife.26517 |
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author | Beining, Marcel Mongiat, Lucas Alberto Schwarzacher, Stephan Wolfgang Cuntz, Hermann Jedlicka, Peter |
author_facet | Beining, Marcel Mongiat, Lucas Alberto Schwarzacher, Stephan Wolfgang Cuntz, Hermann Jedlicka, Peter |
author_sort | Beining, Marcel |
collection | PubMed |
description | Compartmental models are the theoretical tool of choice for understanding single neuron computations. However, many models are incomplete, built ad hoc and require tuning for each novel condition rendering them of limited usability. Here, we present T2N, a powerful interface to control NEURON with Matlab and TREES toolbox, which supports generating models stable over a broad range of reconstructed and synthetic morphologies. We illustrate this for a novel, highly detailed active model of dentate granule cells (GCs) replicating a wide palette of experiments from various labs. By implementing known differences in ion channel composition and morphology, our model reproduces data from mouse or rat, mature or adult-born GCs as well as pharmacological interventions and epileptic conditions. This work sets a new benchmark for detailed compartmental modeling. T2N is suitable for creating robust models useful for large-scale networks that could lead to novel predictions. We discuss possible T2N application in degeneracy studies. |
format | Online Article Text |
id | pubmed-5737656 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-57376562017-12-21 T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells Beining, Marcel Mongiat, Lucas Alberto Schwarzacher, Stephan Wolfgang Cuntz, Hermann Jedlicka, Peter eLife Computational and Systems Biology Compartmental models are the theoretical tool of choice for understanding single neuron computations. However, many models are incomplete, built ad hoc and require tuning for each novel condition rendering them of limited usability. Here, we present T2N, a powerful interface to control NEURON with Matlab and TREES toolbox, which supports generating models stable over a broad range of reconstructed and synthetic morphologies. We illustrate this for a novel, highly detailed active model of dentate granule cells (GCs) replicating a wide palette of experiments from various labs. By implementing known differences in ion channel composition and morphology, our model reproduces data from mouse or rat, mature or adult-born GCs as well as pharmacological interventions and epileptic conditions. This work sets a new benchmark for detailed compartmental modeling. T2N is suitable for creating robust models useful for large-scale networks that could lead to novel predictions. We discuss possible T2N application in degeneracy studies. eLife Sciences Publications, Ltd 2017-11-22 /pmc/articles/PMC5737656/ /pubmed/29165247 http://dx.doi.org/10.7554/eLife.26517 Text en © 2017, Beining et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Computational and Systems Biology Beining, Marcel Mongiat, Lucas Alberto Schwarzacher, Stephan Wolfgang Cuntz, Hermann Jedlicka, Peter T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells |
title | T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells |
title_full | T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells |
title_fullStr | T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells |
title_full_unstemmed | T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells |
title_short | T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells |
title_sort | t2n as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells |
topic | Computational and Systems Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737656/ https://www.ncbi.nlm.nih.gov/pubmed/29165247 http://dx.doi.org/10.7554/eLife.26517 |
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