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T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells

Compartmental models are the theoretical tool of choice for understanding single neuron computations. However, many models are incomplete, built ad hoc and require tuning for each novel condition rendering them of limited usability. Here, we present T2N, a powerful interface to control NEURON with M...

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Detalles Bibliográficos
Autores principales: Beining, Marcel, Mongiat, Lucas Alberto, Schwarzacher, Stephan Wolfgang, Cuntz, Hermann, Jedlicka, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737656/
https://www.ncbi.nlm.nih.gov/pubmed/29165247
http://dx.doi.org/10.7554/eLife.26517
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author Beining, Marcel
Mongiat, Lucas Alberto
Schwarzacher, Stephan Wolfgang
Cuntz, Hermann
Jedlicka, Peter
author_facet Beining, Marcel
Mongiat, Lucas Alberto
Schwarzacher, Stephan Wolfgang
Cuntz, Hermann
Jedlicka, Peter
author_sort Beining, Marcel
collection PubMed
description Compartmental models are the theoretical tool of choice for understanding single neuron computations. However, many models are incomplete, built ad hoc and require tuning for each novel condition rendering them of limited usability. Here, we present T2N, a powerful interface to control NEURON with Matlab and TREES toolbox, which supports generating models stable over a broad range of reconstructed and synthetic morphologies. We illustrate this for a novel, highly detailed active model of dentate granule cells (GCs) replicating a wide palette of experiments from various labs. By implementing known differences in ion channel composition and morphology, our model reproduces data from mouse or rat, mature or adult-born GCs as well as pharmacological interventions and epileptic conditions. This work sets a new benchmark for detailed compartmental modeling. T2N is suitable for creating robust models useful for large-scale networks that could lead to novel predictions. We discuss possible T2N application in degeneracy studies.
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spelling pubmed-57376562017-12-21 T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells Beining, Marcel Mongiat, Lucas Alberto Schwarzacher, Stephan Wolfgang Cuntz, Hermann Jedlicka, Peter eLife Computational and Systems Biology Compartmental models are the theoretical tool of choice for understanding single neuron computations. However, many models are incomplete, built ad hoc and require tuning for each novel condition rendering them of limited usability. Here, we present T2N, a powerful interface to control NEURON with Matlab and TREES toolbox, which supports generating models stable over a broad range of reconstructed and synthetic morphologies. We illustrate this for a novel, highly detailed active model of dentate granule cells (GCs) replicating a wide palette of experiments from various labs. By implementing known differences in ion channel composition and morphology, our model reproduces data from mouse or rat, mature or adult-born GCs as well as pharmacological interventions and epileptic conditions. This work sets a new benchmark for detailed compartmental modeling. T2N is suitable for creating robust models useful for large-scale networks that could lead to novel predictions. We discuss possible T2N application in degeneracy studies. eLife Sciences Publications, Ltd 2017-11-22 /pmc/articles/PMC5737656/ /pubmed/29165247 http://dx.doi.org/10.7554/eLife.26517 Text en © 2017, Beining et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Computational and Systems Biology
Beining, Marcel
Mongiat, Lucas Alberto
Schwarzacher, Stephan Wolfgang
Cuntz, Hermann
Jedlicka, Peter
T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
title T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
title_full T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
title_fullStr T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
title_full_unstemmed T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
title_short T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
title_sort t2n as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells
topic Computational and Systems Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737656/
https://www.ncbi.nlm.nih.gov/pubmed/29165247
http://dx.doi.org/10.7554/eLife.26517
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