Cargando…

Family-specific scaling laws in bacterial genomes

Among several quantitative invariants found in evolutionary genomics, one of the most striking is the scaling of the overall abundance of proteins, or protein domains, sharing a specific functional annotation across genomes of given size. The size of these functional categories change, on average, a...

Descripción completa

Detalles Bibliográficos
Autores principales:	De Lazzari, Eleonora, Grilli, Jacopo, Maslov, Sergei, Cosentino Lagomarsino, Marco
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Computational Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737699/ https://www.ncbi.nlm.nih.gov/pubmed/28605556 http://dx.doi.org/10.1093/nar/gkx510

Ejemplares similares

Joint scaling laws in functional and evolutionary categories in prokaryotic genomes
por: Grilli, J., et al.
Publicado: (2012)

Cross-species gene-family fluctuations reveal the dynamics of horizontal transfers
por: Grilli, Jacopo, et al.
Publicado: (2014)

Large-scale dynamics of horizontal transfers
por: Grassi, Luigi, et al.
Publicado: (2012)

Cell-to-cell variability and robustness in S-phase duration from genome replication kinetics
por: Zhang, Qing, et al.
Publicado: (2017)

Metacommunity structure preserves genome diversity in the presence of gene-specific selective sweeps under moderate rates of horizontal gene transfer
por: Pompei, Simone, et al.
Publicado: (2023)

An evolutionary model identifies the main evolutionary biases for the evolution of genome-replication profiles
por: Droghetti, Rossana, et al.
Publicado: (2021)

Stochastic timing in gene expression for simple regulatory strategies
por: Co, Alma Dal, et al.
Publicado: (2017)

Concurrent processes set E. coli cell division
por: Micali, Gabriele, et al.
Publicado: (2018)

The Empirical Fluctuation Pattern of E. coli Division Control
por: Grilli, Jacopo, et al.
Publicado: (2018)

Two different cell-cycle processes determine the timing of cell division in Escherichia coli
por: Colin, Alexandra, et al.
Publicado: (2021)

Macroecological laws describe variation and diversity in microbial communities
por: Grilli, Jacopo
Publicado: (2020)

Protein degradation sets the fraction of active ribosomes at vanishing growth
por: Calabrese, Ludovico, et al.
Publicado: (2022)

The large-scale organization of the bacterial network of ecological co-occurrence interactions
por: Freilich, Shiri, et al.
Publicado: (2010)

The use of Amdahl's scaled law in determining the power of vector computers
por: Wacker, H M
Publicado: (1990)

New insights into the structures and interactions of bacterial Y-family DNA polymerases
por: Timinskas, Kęstutis, et al.
Publicado: (2019)

RNIE: genome-wide prediction of bacterial intrinsic terminators
por: Gardner, Paul P., et al.
Publicado: (2011)

Identification and analysis of integrons and cassette arrays in bacterial genomes
por: Cury, Jean, et al.
Publicado: (2016)

Reconstructing genome-scale metabolic models with merlin
por: Dias, Oscar, et al.
Publicado: (2015)

Linking scaling laws across eukaryotes
por: Hatton, Ian A., et al.
Publicado: (2019)

Volume growth in animal cells is cell cycle dependent and shows additive fluctuations
por: Cadart, Clotilde, et al.
Publicado: (2022)

Assessing base-resolution DNA mechanics on the genome scale
por: Jiang, Wen-Jie, et al.
Publicado: (2023)

Scaling Laws for Mitotic Chromosomes
por: Kramer, Eric M., et al.
Publicado: (2021)

Shape-based alignment of genomic landscapes in multi-scale resolution
por: Ashida, Hiroki, et al.
Publicado: (2012)

Gains and unexpected lessons from genome-scale promoter mapping
por: Shavkunov, K. S., et al.
Publicado: (2009)

Putting scaling laws on a physical foundation
por: Ye, Yiyang, et al.
Publicado: (2023)

Physical basis of the cell size scaling laws
por: Rollin, Romain, et al.
Publicado: (2023)

Operon prediction using both genome-specific and general genomic information
por: Dam, Phuongan, et al.
Publicado: (2007)

Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli
por: Lee, Heewook, et al.
Publicado: (2016)

Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
por: Fouts, Derrick E.
Publicado: (2006)

The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli
por: Srinivasan, Rajalakshmi, et al.
Publicado: (2015)

Hit selection with false discovery rate control in genome-scale RNAi screens
por: Zhang, Xiaohua Douglas, et al.
Publicado: (2008)

GOing Bayesian: model-based gene set analysis of genome-scale data
por: Bauer, Sebastian, et al.
Publicado: (2010)

Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
por: Machado, Daniel, et al.
Publicado: (2018)

metaGEM: reconstruction of genome scale metabolic models directly from metagenomes
por: Zorrilla, Francisco, et al.
Publicado: (2021)

merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models
por: Capela, João, et al.
Publicado: (2022)

Large-scale computational and statistical analyses of high transcription potentialities in 32 prokaryotic genomes
por: Sinoquet, Christine, et al.
Publicado: (2008)

Ten laws for security
por: Diehl, Eric
Publicado: (2016)

Cloud Computing Law
por: Millard, Christopher
Publicado: (2013)

A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case
por: Yu, G.X., et al.
Publicado: (2007)

Cell assemblies at multiple time scales with arbitrary lag constellations
por: Russo, Eleonora, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_qca2be5r80bnsh1m71ve6jld2r