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De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063

Laccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not bee...

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Autores principales: Otero, Igor Vinicius Ramos, Ferro, Milene, Bacci, Maurício, Ferreira, Henrique, Sette, Lara Durães
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738328/
https://www.ncbi.nlm.nih.gov/pubmed/29264716
http://dx.doi.org/10.1186/s13568-017-0526-7
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author Otero, Igor Vinicius Ramos
Ferro, Milene
Bacci, Maurício
Ferreira, Henrique
Sette, Lara Durães
author_facet Otero, Igor Vinicius Ramos
Ferro, Milene
Bacci, Maurício
Ferreira, Henrique
Sette, Lara Durães
author_sort Otero, Igor Vinicius Ramos
collection PubMed
description Laccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13568-017-0526-7) contains supplementary material, which is available to authorized users.
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spelling pubmed-57383282018-01-23 De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 Otero, Igor Vinicius Ramos Ferro, Milene Bacci, Maurício Ferreira, Henrique Sette, Lara Durães AMB Express Original Article Laccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13568-017-0526-7) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2017-12-20 /pmc/articles/PMC5738328/ /pubmed/29264716 http://dx.doi.org/10.1186/s13568-017-0526-7 Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Otero, Igor Vinicius Ramos
Ferro, Milene
Bacci, Maurício
Ferreira, Henrique
Sette, Lara Durães
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_full De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_fullStr De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_full_unstemmed De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_short De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_sort de novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete peniophora sp. cbmai 1063
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738328/
https://www.ncbi.nlm.nih.gov/pubmed/29264716
http://dx.doi.org/10.1186/s13568-017-0526-7
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