Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1

Bacteria of the genus Pectobacterium are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of Pectobacterium carotovorum strain SCC1, a Finnish soft rot model strain isolated from a diseased potato tuber in the...

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Autores principales: Niemi, Outi, Laine, Pia, Koskinen, Patrik, Pasanen, Miia, Pennanen, Ville, Harjunpää, Heidi, Nykyri, Johanna, Holm, Liisa, Paulin, Lars, Auvinen, Petri, Palva, E. Tapio, Pirhonen, Minna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738896/
https://www.ncbi.nlm.nih.gov/pubmed/29276572
http://dx.doi.org/10.1186/s40793-017-0301-z
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author Niemi, Outi
Laine, Pia
Koskinen, Patrik
Pasanen, Miia
Pennanen, Ville
Harjunpää, Heidi
Nykyri, Johanna
Holm, Liisa
Paulin, Lars
Auvinen, Petri
Palva, E. Tapio
Pirhonen, Minna
author_facet Niemi, Outi
Laine, Pia
Koskinen, Patrik
Pasanen, Miia
Pennanen, Ville
Harjunpää, Heidi
Nykyri, Johanna
Holm, Liisa
Paulin, Lars
Auvinen, Petri
Palva, E. Tapio
Pirhonen, Minna
author_sort Niemi, Outi
collection PubMed
description Bacteria of the genus Pectobacterium are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of Pectobacterium carotovorum strain SCC1, a Finnish soft rot model strain isolated from a diseased potato tuber in the early 1980’s. The genome of strain SCC1 consists of one circular chromosome of 4,974,798 bp and one circular plasmid of 5524 bp. In total 4451 genes were predicted, of which 4349 are protein coding and 102 are RNA genes.
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spelling pubmed-57388962017-12-22 Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1 Niemi, Outi Laine, Pia Koskinen, Patrik Pasanen, Miia Pennanen, Ville Harjunpää, Heidi Nykyri, Johanna Holm, Liisa Paulin, Lars Auvinen, Petri Palva, E. Tapio Pirhonen, Minna Stand Genomic Sci Short Genome Report Bacteria of the genus Pectobacterium are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of Pectobacterium carotovorum strain SCC1, a Finnish soft rot model strain isolated from a diseased potato tuber in the early 1980’s. The genome of strain SCC1 consists of one circular chromosome of 4,974,798 bp and one circular plasmid of 5524 bp. In total 4451 genes were predicted, of which 4349 are protein coding and 102 are RNA genes. BioMed Central 2017-12-20 /pmc/articles/PMC5738896/ /pubmed/29276572 http://dx.doi.org/10.1186/s40793-017-0301-z Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Niemi, Outi
Laine, Pia
Koskinen, Patrik
Pasanen, Miia
Pennanen, Ville
Harjunpää, Heidi
Nykyri, Johanna
Holm, Liisa
Paulin, Lars
Auvinen, Petri
Palva, E. Tapio
Pirhonen, Minna
Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
title Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
title_full Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
title_fullStr Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
title_full_unstemmed Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
title_short Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
title_sort genome sequence of the model plant pathogen pectobacterium carotovorum scc1
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738896/
https://www.ncbi.nlm.nih.gov/pubmed/29276572
http://dx.doi.org/10.1186/s40793-017-0301-z
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