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Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9(T)
Croceicoccus marinus E4A9(T)was isolated from deep-sea sediment collected from the East Pacific polymetallic nodule area. The strain is able to produce esterase, which is widely used in the food, perfume, cosmetic, chemical, agricultural and pharmaceutical industries. Here we describe the characteri...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5740743/ https://www.ncbi.nlm.nih.gov/pubmed/29299108 http://dx.doi.org/10.1186/s40793-017-0300-0 |
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author | Wu, Yue-Hong Cheng, Hong Huo, Ying-Yi Xu, Lin Liu, Qian Wang, Chun-Sheng Xu, Xue-Wei |
author_facet | Wu, Yue-Hong Cheng, Hong Huo, Ying-Yi Xu, Lin Liu, Qian Wang, Chun-Sheng Xu, Xue-Wei |
author_sort | Wu, Yue-Hong |
collection | PubMed |
description | Croceicoccus marinus E4A9(T)was isolated from deep-sea sediment collected from the East Pacific polymetallic nodule area. The strain is able to produce esterase, which is widely used in the food, perfume, cosmetic, chemical, agricultural and pharmaceutical industries. Here we describe the characteristics of strain E4A9, including the genome sequence and annotation, presence of esterases, and metabolic pathways of the organism. The genome of strain E4A9(T) comprises 4,109,188 bp, with one chromosome (3,001,363 bp) and two large circular plasmids (761,621 bp and 346,204 bp, respectively). Complete genome contains 3653 coding sequences, 48 tRNAs, two operons of 16S–23S-5S rRNA gene and three ncRNAs. Strain E4A9(T) encodes 10 genes related to esterase, and three of the esterases (E3, E6 and E10) was successfully cloned and expressed in Escherichia coli Rosetta in a soluble form, revealing its potential application in biotechnological industry. Moreover, the genome provides clues of metabolic pathways of strain E4A9(T), reflecting its adaptations to the ambient environment. The genome sequence of C. marinus E4A9(T) now provides the fundamental information for future studies. |
format | Online Article Text |
id | pubmed-5740743 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57407432018-01-03 Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9(T) Wu, Yue-Hong Cheng, Hong Huo, Ying-Yi Xu, Lin Liu, Qian Wang, Chun-Sheng Xu, Xue-Wei Stand Genomic Sci Short Genome Report Croceicoccus marinus E4A9(T)was isolated from deep-sea sediment collected from the East Pacific polymetallic nodule area. The strain is able to produce esterase, which is widely used in the food, perfume, cosmetic, chemical, agricultural and pharmaceutical industries. Here we describe the characteristics of strain E4A9, including the genome sequence and annotation, presence of esterases, and metabolic pathways of the organism. The genome of strain E4A9(T) comprises 4,109,188 bp, with one chromosome (3,001,363 bp) and two large circular plasmids (761,621 bp and 346,204 bp, respectively). Complete genome contains 3653 coding sequences, 48 tRNAs, two operons of 16S–23S-5S rRNA gene and three ncRNAs. Strain E4A9(T) encodes 10 genes related to esterase, and three of the esterases (E3, E6 and E10) was successfully cloned and expressed in Escherichia coli Rosetta in a soluble form, revealing its potential application in biotechnological industry. Moreover, the genome provides clues of metabolic pathways of strain E4A9(T), reflecting its adaptations to the ambient environment. The genome sequence of C. marinus E4A9(T) now provides the fundamental information for future studies. BioMed Central 2017-12-21 /pmc/articles/PMC5740743/ /pubmed/29299108 http://dx.doi.org/10.1186/s40793-017-0300-0 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Wu, Yue-Hong Cheng, Hong Huo, Ying-Yi Xu, Lin Liu, Qian Wang, Chun-Sheng Xu, Xue-Wei Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9(T) |
title | Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9(T) |
title_full | Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9(T) |
title_fullStr | Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9(T) |
title_full_unstemmed | Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9(T) |
title_short | Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9(T) |
title_sort | complete genome sequence of esterase-producing bacterium croceicoccus marinus e4a9(t) |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5740743/ https://www.ncbi.nlm.nih.gov/pubmed/29299108 http://dx.doi.org/10.1186/s40793-017-0300-0 |
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