Cargando…

Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

Chromatin accessibility, a crucial component of genome regulation, has primarily been studied in homogeneous and simple systems, such as isolated cell populations or early-development models. Whether chromatin accessibility can be assessed in complex, dynamic systems in vivo with high sensitivity re...

Descripción completa

Detalles Bibliográficos
Autores principales:	Daugherty, Aaron C., Yeo, Robin W., Buenrostro, Jason D., Greenleaf, William J., Kundaje, Anshul, Brunet, Anne
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2017
Materias:	Resource
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741055/ https://www.ncbi.nlm.nih.gov/pubmed/29141961 http://dx.doi.org/10.1101/gr.226233.117

Ejemplares similares

Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes
por: Durham, Timothy J., et al.
Publicado: (2021)

Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses
por: Benayoun, Bérénice A., et al.
Publicado: (2019)

Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis
por: Li, Yingshu, et al.
Publicado: (2020)

Chromatin accessibility dynamics of neurogenic niche cells reveal defects in neural stem cell adhesion and migration during aging
por: Yeo, Robin W., et al.
Publicado: (2023)

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
por: Wang, Jie, et al.
Publicado: (2012)

Lineage-specific and single cell chromatin accessibility charts human hematopoiesis and leukemia evolution
por: Corces, M. Ryan, et al.
Publicado: (2016)

The landscape of the histone-organized chromatin of Bdellovibrionota bacteria
por: Marinov, Georgi K., et al.
Publicado: (2023)

Single-cell chromatin accessibility reveals principles of regulatory variation
por: Buenrostro, Jason D., et al.
Publicado: (2015)

An atlas of chromatin accessibility in the adult human brain
por: Fullard, John F., et al.
Publicado: (2018)

The accessible chromatin landscape of the murine hippocampus at single-cell resolution
por: Sinnamon, John R., et al.
Publicado: (2019)

A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements
por: Idriss, Salam, et al.
Publicado: (2023)

The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures
por: Chen, Ron A.-J., et al.
Publicado: (2013)

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
por: Bogdanović, Ozren, et al.
Publicado: (2012)

The chromatin landscape of the euryarchaeon Haloferax volcanii
por: Marinov, Georgi K., et al.
Publicado: (2023)

Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma
por: Aguilar, Carlos A., et al.
Publicado: (2016)

High-Resolution Chromatin Dynamics during a Yeast Stress Response
por: Weiner, Assaf, et al.
Publicado: (2015)

Resolution of structural variation in diverse mouse genomes reveals chromatin remodeling due to transposable elements
por: Ferraj, Ardian, et al.
Publicado: (2023)

The chromatin organization of a chlorarachniophyte nucleomorph genome
por: Marinov, Georgi K., et al.
Publicado: (2022)

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos
por: McGarvey, Alison C., et al.
Publicado: (2022)

Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development
por: Pawlak, Michal, et al.
Publicado: (2019)

The transcription start site landscape of C. elegans
por: Saito, Taro Leo, et al.
Publicado: (2013)

Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases
por: Wang, Sean K., et al.
Publicado: (2022)

Genome sequencing of C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements
por: Maroilley, Tatiana, et al.
Publicado: (2023)

A single-cell map of dynamic chromatin landscapes of immune cells in renal cell carcinoma
por: Kourtis, Nikos, et al.
Publicado: (2022)

Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development
por: Li, Runsheng, et al.
Publicado: (2020)

Mapping the invisible chromatin transactions of prophase chromosome remodeling
por: Samejima, Itaru, et al.
Publicado: (2022)

Recompleting the Caenorhabditis elegans genome
por: Yoshimura, Jun, et al.
Publicado: (2019)

Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans
por: Kim, Chuna, et al.
Publicado: (2019)

Long noncoding RNAs in C. elegans
por: Nam, Jin-Wu, et al.
Publicado: (2012)

The time-resolved transcriptome of C. elegans
por: Boeck, Max E., et al.
Publicado: (2016)

Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation
por: Brennan, Kaelan J., et al.
Publicado: (2023)

Enhancer Chromatin and 3D Genome Architecture Changes from Naive to Primed Human Embryonic Stem Cell States
por: Battle, Stephanie L., et al.
Publicado: (2019)

Proteomics of a fuzzy organelle: interphase chromatin
por: Kustatscher, Georg, et al.
Publicado: (2014)

Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps
por: Mortazavi, Ali, et al.
Publicado: (2013)

Brief Report: Cell Cycle Dynamics of Human Pluripotent Stem Cells Primed for Differentiation
por: Shcherbina, Anna, et al.
Publicado: (2019)

Extensive SUMO Modification of Repressive Chromatin Factors Distinguishes Pluripotent from Somatic Cells
por: Theurillat, Ilan, et al.
Publicado: (2020)

Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts
por: Nair, Surag, et al.
Publicado: (2019)

RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development
por: Tan, Meng How, et al.
Publicado: (2013)

Ageing induces tissue‐specific transcriptomic changes in Caenorhabditis elegans
por: Wang, Xueqing, et al.
Publicado: (2022)

Chromatin accessibility dynamics across C. elegans development and ageing
por: Jänes, Jürgen, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_vf1na7j7j859djpb31ril7cad9