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ETS-NOCV decomposition of the reaction force for double-proton transfer in formamide-derived systems
The analysis of the electronic-structure changes along IRC paths for double-proton-transfer reactions in the formamide dimer (R1), formamide–thioformamide system (R2), and the thioformamide dimer (R3) was performed based on the extended-transition-state natural orbitals for chemical valence (ETS-NOC...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741796/ https://www.ncbi.nlm.nih.gov/pubmed/29273840 http://dx.doi.org/10.1007/s00894-017-3564-9 |
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author | Talaga, Piotr Brela, Mateusz Z. Michalak, Artur |
author_facet | Talaga, Piotr Brela, Mateusz Z. Michalak, Artur |
author_sort | Talaga, Piotr |
collection | PubMed |
description | The analysis of the electronic-structure changes along IRC paths for double-proton-transfer reactions in the formamide dimer (R1), formamide–thioformamide system (R2), and the thioformamide dimer (R3) was performed based on the extended-transition-state natural orbitals for chemical valence (ETS-NOCV) partitioning of the reaction force, considering the intra-fragments strain and the inter-fragments interaction terms, and further—the electrostatic, Pauli-repulsion and orbital interaction components, with the latter being decomposed into the NOCV components. Two methods of the system partitioning into the fragments were considered (‘reactant perspective’/bond-formation, ‘product perspective’ / bond-breaking). In agreement with previous studies, the results indicate that the major changes in the electronic structure occur in the transition state region; the bond-breaking processes are, however, initiated already in the reactant region, prior to entering the TS region. The electrostatic contributions were identified as the main factor responsible for the increase in the activation barrier in the order R1 < R2 < R3. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00894-017-3564-9) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5741796 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-57417962018-01-04 ETS-NOCV decomposition of the reaction force for double-proton transfer in formamide-derived systems Talaga, Piotr Brela, Mateusz Z. Michalak, Artur J Mol Model Original Paper The analysis of the electronic-structure changes along IRC paths for double-proton-transfer reactions in the formamide dimer (R1), formamide–thioformamide system (R2), and the thioformamide dimer (R3) was performed based on the extended-transition-state natural orbitals for chemical valence (ETS-NOCV) partitioning of the reaction force, considering the intra-fragments strain and the inter-fragments interaction terms, and further—the electrostatic, Pauli-repulsion and orbital interaction components, with the latter being decomposed into the NOCV components. Two methods of the system partitioning into the fragments were considered (‘reactant perspective’/bond-formation, ‘product perspective’ / bond-breaking). In agreement with previous studies, the results indicate that the major changes in the electronic structure occur in the transition state region; the bond-breaking processes are, however, initiated already in the reactant region, prior to entering the TS region. The electrostatic contributions were identified as the main factor responsible for the increase in the activation barrier in the order R1 < R2 < R3. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00894-017-3564-9) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2017-12-22 2018 /pmc/articles/PMC5741796/ /pubmed/29273840 http://dx.doi.org/10.1007/s00894-017-3564-9 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Paper Talaga, Piotr Brela, Mateusz Z. Michalak, Artur ETS-NOCV decomposition of the reaction force for double-proton transfer in formamide-derived systems |
title | ETS-NOCV decomposition of the reaction force for double-proton transfer in formamide-derived systems |
title_full | ETS-NOCV decomposition of the reaction force for double-proton transfer in formamide-derived systems |
title_fullStr | ETS-NOCV decomposition of the reaction force for double-proton transfer in formamide-derived systems |
title_full_unstemmed | ETS-NOCV decomposition of the reaction force for double-proton transfer in formamide-derived systems |
title_short | ETS-NOCV decomposition of the reaction force for double-proton transfer in formamide-derived systems |
title_sort | ets-nocv decomposition of the reaction force for double-proton transfer in formamide-derived systems |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741796/ https://www.ncbi.nlm.nih.gov/pubmed/29273840 http://dx.doi.org/10.1007/s00894-017-3564-9 |
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