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The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains
Brucellosis is a commonly diagnosed zoonosis that causes infertility and abortion in cattle, it is acquired from handling of infected animals or consuming contaminated milk or milk products. In Colombia, it belongs to the official notifiable disease list, despite its relevance little is known about...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741917/ https://www.ncbi.nlm.nih.gov/pubmed/29299109 http://dx.doi.org/10.1186/s40793-017-0299-2 |
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author | Pacheco-Montealegre, Mauricio Patiño, Rocío E. Torres, Ligia Jiménez, Sabrina Rodríguez, José Luis Caro-Quintero, Alejandro |
author_facet | Pacheco-Montealegre, Mauricio Patiño, Rocío E. Torres, Ligia Jiménez, Sabrina Rodríguez, José Luis Caro-Quintero, Alejandro |
author_sort | Pacheco-Montealegre, Mauricio |
collection | PubMed |
description | Brucellosis is a commonly diagnosed zoonosis that causes infertility and abortion in cattle, it is acquired from handling of infected animals or consuming contaminated milk or milk products. In Colombia, it belongs to the official notifiable disease list, despite its relevance little is known about the origin, epidemiology and the genetic constituents of the strains circulating in dairy farms. Here we present the draft genome of B. abortus Ba Col-B012, an isolate obtained from a female Holstein belonging to a dairy farm in Nariño, Colombia. This genome comprises 3,234,714 bp and 3018 predicted protein-encoding genes. Using comparative genomics and phylogenetic analysis, we found that the strain Ba Col-B012 clustered with known biovar 4 variants. The analysis of the core genes allowed the identification of polymorphisms only present in biovar 4 genomes, these regions are proposed as possible targets for identification by PCR. The sequencing of B. abortus Ba Col-B012 genome provides important insights to improve the diagnosis and the epidemiology of this disease and represents the first report of the biovar 4 in Colombia. |
format | Online Article Text |
id | pubmed-5741917 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57419172018-01-03 The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains Pacheco-Montealegre, Mauricio Patiño, Rocío E. Torres, Ligia Jiménez, Sabrina Rodríguez, José Luis Caro-Quintero, Alejandro Stand Genomic Sci Extended Genome Report Brucellosis is a commonly diagnosed zoonosis that causes infertility and abortion in cattle, it is acquired from handling of infected animals or consuming contaminated milk or milk products. In Colombia, it belongs to the official notifiable disease list, despite its relevance little is known about the origin, epidemiology and the genetic constituents of the strains circulating in dairy farms. Here we present the draft genome of B. abortus Ba Col-B012, an isolate obtained from a female Holstein belonging to a dairy farm in Nariño, Colombia. This genome comprises 3,234,714 bp and 3018 predicted protein-encoding genes. Using comparative genomics and phylogenetic analysis, we found that the strain Ba Col-B012 clustered with known biovar 4 variants. The analysis of the core genes allowed the identification of polymorphisms only present in biovar 4 genomes, these regions are proposed as possible targets for identification by PCR. The sequencing of B. abortus Ba Col-B012 genome provides important insights to improve the diagnosis and the epidemiology of this disease and represents the first report of the biovar 4 in Colombia. BioMed Central 2017-12-22 /pmc/articles/PMC5741917/ /pubmed/29299109 http://dx.doi.org/10.1186/s40793-017-0299-2 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Extended Genome Report Pacheco-Montealegre, Mauricio Patiño, Rocío E. Torres, Ligia Jiménez, Sabrina Rodríguez, José Luis Caro-Quintero, Alejandro The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains |
title | The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains |
title_full | The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains |
title_fullStr | The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains |
title_full_unstemmed | The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains |
title_short | The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains |
title_sort | draft genome of brucella abortus strain ba col-b012, isolated from a dairy farm in nariño, colombia, bring new insights into the epidemiology of biovar 4 strains |
topic | Extended Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5741917/ https://www.ncbi.nlm.nih.gov/pubmed/29299109 http://dx.doi.org/10.1186/s40793-017-0299-2 |
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