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Navigating features: a topologically informed chart of electromyographic features space

The success of biological signal pattern recognition depends crucially on the selection of relevant features. Across signal and imaging modalities, a large number of features have been proposed, leading to feature redundancy and the need for optimal feature set identification. A further complication...

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Autores principales: Phinyomark, Angkoon, Khushaba, Rami N., Ibáñez-Marcelo, Esther, Patania, Alice, Scheme, Erik, Petri, Giovanni
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5746577/
https://www.ncbi.nlm.nih.gov/pubmed/29212759
http://dx.doi.org/10.1098/rsif.2017.0734
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author Phinyomark, Angkoon
Khushaba, Rami N.
Ibáñez-Marcelo, Esther
Patania, Alice
Scheme, Erik
Petri, Giovanni
author_facet Phinyomark, Angkoon
Khushaba, Rami N.
Ibáñez-Marcelo, Esther
Patania, Alice
Scheme, Erik
Petri, Giovanni
author_sort Phinyomark, Angkoon
collection PubMed
description The success of biological signal pattern recognition depends crucially on the selection of relevant features. Across signal and imaging modalities, a large number of features have been proposed, leading to feature redundancy and the need for optimal feature set identification. A further complication is that, due to the inherent biological variability, even the same classification problem on different datasets can display variations in the respective optimal sets, casting doubts on the generalizability of relevant features. Here, we approach this problem by leveraging topological tools to create charts of features spaces. These charts highlight feature sub-groups that encode similar information (and their respective similarities) allowing for a principled and interpretable choice of features for classification and analysis. Using multiple electromyographic (EMG) datasets as a case study, we use this feature chart to identify functional groups among 58 state-of-the-art EMG features, and to show that they generalize across three different forearm EMG datasets obtained from able-bodied subjects during hand and finger contractions. We find that these groups describe meaningful non-redundant information, succinctly recapitulating information about different regions of feature space. We then recommend representative features from each group based on maximum class separability, robustness and minimum complexity.
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spelling pubmed-57465772017-12-31 Navigating features: a topologically informed chart of electromyographic features space Phinyomark, Angkoon Khushaba, Rami N. Ibáñez-Marcelo, Esther Patania, Alice Scheme, Erik Petri, Giovanni J R Soc Interface Life Sciences–Mathematics interface The success of biological signal pattern recognition depends crucially on the selection of relevant features. Across signal and imaging modalities, a large number of features have been proposed, leading to feature redundancy and the need for optimal feature set identification. A further complication is that, due to the inherent biological variability, even the same classification problem on different datasets can display variations in the respective optimal sets, casting doubts on the generalizability of relevant features. Here, we approach this problem by leveraging topological tools to create charts of features spaces. These charts highlight feature sub-groups that encode similar information (and their respective similarities) allowing for a principled and interpretable choice of features for classification and analysis. Using multiple electromyographic (EMG) datasets as a case study, we use this feature chart to identify functional groups among 58 state-of-the-art EMG features, and to show that they generalize across three different forearm EMG datasets obtained from able-bodied subjects during hand and finger contractions. We find that these groups describe meaningful non-redundant information, succinctly recapitulating information about different regions of feature space. We then recommend representative features from each group based on maximum class separability, robustness and minimum complexity. The Royal Society 2017-12 2017-12-06 /pmc/articles/PMC5746577/ /pubmed/29212759 http://dx.doi.org/10.1098/rsif.2017.0734 Text en © 2017 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Mathematics interface
Phinyomark, Angkoon
Khushaba, Rami N.
Ibáñez-Marcelo, Esther
Patania, Alice
Scheme, Erik
Petri, Giovanni
Navigating features: a topologically informed chart of electromyographic features space
title Navigating features: a topologically informed chart of electromyographic features space
title_full Navigating features: a topologically informed chart of electromyographic features space
title_fullStr Navigating features: a topologically informed chart of electromyographic features space
title_full_unstemmed Navigating features: a topologically informed chart of electromyographic features space
title_short Navigating features: a topologically informed chart of electromyographic features space
title_sort navigating features: a topologically informed chart of electromyographic features space
topic Life Sciences–Mathematics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5746577/
https://www.ncbi.nlm.nih.gov/pubmed/29212759
http://dx.doi.org/10.1098/rsif.2017.0734
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