Draft genome of tule elk Cervus canadensis nannodes

This paper presents the first draft genome of the tule elk ( Cervus elaphus nannodes), a subspecies native to California that underwent an extreme genetic bottleneck in the late 1800s.  The genome was generated from Illumina HiSeq 3000 whole genome sequencing of four individuals, resulting in the as...

Descripción completa

Detalles Bibliográficos
Autores principales: Mizzi, Jessica E., Lounsberry, Zachary T., Brown, C. Titus, Sacks, Benjamin N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2017
Materias:
Data Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747339/
https://www.ncbi.nlm.nih.gov/pubmed/29333237
http://dx.doi.org/10.12688/f1000research.12636.2
_version_ 1783289259016323072
author Mizzi, Jessica E.
Lounsberry, Zachary T.
Brown, C. Titus
Sacks, Benjamin N.
author_facet Mizzi, Jessica E.
Lounsberry, Zachary T.
Brown, C. Titus
Sacks, Benjamin N.
author_sort Mizzi, Jessica E.
collection PubMed
description This paper presents the first draft genome of the tule elk ( Cervus elaphus nannodes), a subspecies native to California that underwent an extreme genetic bottleneck in the late 1800s.  The genome was generated from Illumina HiSeq 3000 whole genome sequencing of four individuals, resulting in the assembly of 2.395 billion base pairs (Gbp) over 602,862 contigs over 500 bp and N50 = 6,885 bp. This genome provides a resource to facilitate future genomic research on elk and other cervids.
format Online
Article
Text
id pubmed-5747339
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher F1000 Research Limited
record_format MEDLINE/PubMed
spelling pubmed-57473392018-01-11 Draft genome of tule elk Cervus canadensis nannodes Mizzi, Jessica E. Lounsberry, Zachary T. Brown, C. Titus Sacks, Benjamin N. F1000Res Data Note This paper presents the first draft genome of the tule elk ( Cervus elaphus nannodes), a subspecies native to California that underwent an extreme genetic bottleneck in the late 1800s.  The genome was generated from Illumina HiSeq 3000 whole genome sequencing of four individuals, resulting in the assembly of 2.395 billion base pairs (Gbp) over 602,862 contigs over 500 bp and N50 = 6,885 bp. This genome provides a resource to facilitate future genomic research on elk and other cervids. F1000 Research Limited 2017-12-11 /pmc/articles/PMC5747339/ /pubmed/29333237 http://dx.doi.org/10.12688/f1000research.12636.2 Text en Copyright: © 2017 Mizzi JE et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Note
Mizzi, Jessica E.
Lounsberry, Zachary T.
Brown, C. Titus
Sacks, Benjamin N.
Draft genome of tule elk Cervus canadensis nannodes
title Draft genome of tule elk Cervus canadensis nannodes
title_full Draft genome of tule elk Cervus canadensis nannodes
title_fullStr Draft genome of tule elk Cervus canadensis nannodes
title_full_unstemmed Draft genome of tule elk Cervus canadensis nannodes
title_short Draft genome of tule elk Cervus canadensis nannodes
title_sort draft genome of tule elk cervus canadensis nannodes
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747339/
https://www.ncbi.nlm.nih.gov/pubmed/29333237
http://dx.doi.org/10.12688/f1000research.12636.2
work_keys_str_mv AT mizzijessicae draftgenomeoftuleelkcervuscanadensisnannodes
AT lounsberryzacharyt draftgenomeoftuleelkcervuscanadensisnannodes
AT brownctitus draftgenomeoftuleelkcervuscanadensisnannodes
AT sacksbenjaminn draftgenomeoftuleelkcervuscanadensisnannodes

Ejemplares similares