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Development of the Precision Link Biobank at Boston Children’s Hospital: Challenges and Opportunities

Increasingly, biobanks are being developed to support organized collections of biological specimens and associated clinical information on broadly consented, diverse patient populations. We describe the implementation of a pediatric biobank, comprised of a fully-informed patient cohort linking speci...

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Autores principales: Bourgeois, Florence T., Avillach, Paul, Kong, Sek Won, Heinz, Michelle M., Tran, Tram A., Chakrabarty, Ramkrishna, Bickel, Jonathan, Sliz, Piotr, Borglund, Erin M., Kornetsky, Susan, Mandl, Kenneth D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5748633/
https://www.ncbi.nlm.nih.gov/pubmed/29244735
http://dx.doi.org/10.3390/jpm7040021
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author Bourgeois, Florence T.
Avillach, Paul
Kong, Sek Won
Heinz, Michelle M.
Tran, Tram A.
Chakrabarty, Ramkrishna
Bickel, Jonathan
Sliz, Piotr
Borglund, Erin M.
Kornetsky, Susan
Mandl, Kenneth D.
author_facet Bourgeois, Florence T.
Avillach, Paul
Kong, Sek Won
Heinz, Michelle M.
Tran, Tram A.
Chakrabarty, Ramkrishna
Bickel, Jonathan
Sliz, Piotr
Borglund, Erin M.
Kornetsky, Susan
Mandl, Kenneth D.
author_sort Bourgeois, Florence T.
collection PubMed
description Increasingly, biobanks are being developed to support organized collections of biological specimens and associated clinical information on broadly consented, diverse patient populations. We describe the implementation of a pediatric biobank, comprised of a fully-informed patient cohort linking specimens to phenotypic data derived from electronic health records (EHR). The Biobank was launched after multiple stakeholders’ input and implemented initially in a pilot phase before hospital-wide expansion in 2016. In-person informed consent is obtained from all participants enrolling in the Biobank and provides permission to: (1) access EHR data for research; (2) collect and use residual specimens produced as by-products of routine care; and (3) share de-identified data and specimens outside of the institution. Participants are recruited throughout the hospital, across diverse clinical settings. We have enrolled 4900 patients to date, and 41% of these have an associated blood sample for DNA processing. Current efforts are focused on aligning the Biobank with other ongoing research efforts at our institution and extending our electronic consenting system to support remote enrollment. A number of pediatric-specific challenges and opportunities is reviewed, including the need to re-consent patients when they reach 18 years of age, the ability to enroll family members accompanying patients and alignment with disease-specific research efforts at our institution and other pediatric centers to increase cohort sizes, particularly for rare diseases.
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spelling pubmed-57486332018-01-07 Development of the Precision Link Biobank at Boston Children’s Hospital: Challenges and Opportunities Bourgeois, Florence T. Avillach, Paul Kong, Sek Won Heinz, Michelle M. Tran, Tram A. Chakrabarty, Ramkrishna Bickel, Jonathan Sliz, Piotr Borglund, Erin M. Kornetsky, Susan Mandl, Kenneth D. J Pers Med Review Increasingly, biobanks are being developed to support organized collections of biological specimens and associated clinical information on broadly consented, diverse patient populations. We describe the implementation of a pediatric biobank, comprised of a fully-informed patient cohort linking specimens to phenotypic data derived from electronic health records (EHR). The Biobank was launched after multiple stakeholders’ input and implemented initially in a pilot phase before hospital-wide expansion in 2016. In-person informed consent is obtained from all participants enrolling in the Biobank and provides permission to: (1) access EHR data for research; (2) collect and use residual specimens produced as by-products of routine care; and (3) share de-identified data and specimens outside of the institution. Participants are recruited throughout the hospital, across diverse clinical settings. We have enrolled 4900 patients to date, and 41% of these have an associated blood sample for DNA processing. Current efforts are focused on aligning the Biobank with other ongoing research efforts at our institution and extending our electronic consenting system to support remote enrollment. A number of pediatric-specific challenges and opportunities is reviewed, including the need to re-consent patients when they reach 18 years of age, the ability to enroll family members accompanying patients and alignment with disease-specific research efforts at our institution and other pediatric centers to increase cohort sizes, particularly for rare diseases. MDPI 2017-12-15 /pmc/articles/PMC5748633/ /pubmed/29244735 http://dx.doi.org/10.3390/jpm7040021 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Bourgeois, Florence T.
Avillach, Paul
Kong, Sek Won
Heinz, Michelle M.
Tran, Tram A.
Chakrabarty, Ramkrishna
Bickel, Jonathan
Sliz, Piotr
Borglund, Erin M.
Kornetsky, Susan
Mandl, Kenneth D.
Development of the Precision Link Biobank at Boston Children’s Hospital: Challenges and Opportunities
title Development of the Precision Link Biobank at Boston Children’s Hospital: Challenges and Opportunities
title_full Development of the Precision Link Biobank at Boston Children’s Hospital: Challenges and Opportunities
title_fullStr Development of the Precision Link Biobank at Boston Children’s Hospital: Challenges and Opportunities
title_full_unstemmed Development of the Precision Link Biobank at Boston Children’s Hospital: Challenges and Opportunities
title_short Development of the Precision Link Biobank at Boston Children’s Hospital: Challenges and Opportunities
title_sort development of the precision link biobank at boston children’s hospital: challenges and opportunities
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5748633/
https://www.ncbi.nlm.nih.gov/pubmed/29244735
http://dx.doi.org/10.3390/jpm7040021
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