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Tree-based Methods for Characterizing Tumor Density Heterogeneity
Solid lesions emerge within diverse tissue environments making their characterization and diagnosis a challenge. With the advent of cancer radiomics, a variety of techniques have been developed to transform images into quantifiable feature sets producing summary statistics that describe the morpholo...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749399/ https://www.ncbi.nlm.nih.gov/pubmed/29218883 |
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author | Shoemaker, Katherine Hobbs, Brian P. Bharath, Karthik Ng, Chaan S. Baladandayuthapani, Veerabhadran |
author_facet | Shoemaker, Katherine Hobbs, Brian P. Bharath, Karthik Ng, Chaan S. Baladandayuthapani, Veerabhadran |
author_sort | Shoemaker, Katherine |
collection | PubMed |
description | Solid lesions emerge within diverse tissue environments making their characterization and diagnosis a challenge. With the advent of cancer radiomics, a variety of techniques have been developed to transform images into quantifiable feature sets producing summary statistics that describe the morphology and texture of solid masses. Relying on empirical distribution summaries as well as grey-level co-occurrence statistics, several approaches have been devised to characterize tissue density heterogeneity. This article proposes a novel decision-tree based approach which quantifies the tissue density heterogeneity of a given lesion through its resultant distribution of tree-structured dissimilarity metrics computed with least common ancestor trees under repeated pixel re-sampling. The methodology, based on statistics derived from Galton-Watson trees, produces metrics that are minimally correlated with existing features, adding new information to the feature space and improving quantitative characterization of the extent to which a CT image conveys heterogeneous density distribution. We demonstrate its practical application through a diagnostic study of adrenal lesions. Integrating the proposed with existing features identifies classifiers of three important lesion types; malignant from benign (AUC = 0.78), functioning from non-functioning (AUC = 0.93) and calcified from non-calcified (AUC of 1). |
format | Online Article Text |
id | pubmed-5749399 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
record_format | MEDLINE/PubMed |
spelling | pubmed-57493992018-01-02 Tree-based Methods for Characterizing Tumor Density Heterogeneity Shoemaker, Katherine Hobbs, Brian P. Bharath, Karthik Ng, Chaan S. Baladandayuthapani, Veerabhadran Pac Symp Biocomput Article Solid lesions emerge within diverse tissue environments making their characterization and diagnosis a challenge. With the advent of cancer radiomics, a variety of techniques have been developed to transform images into quantifiable feature sets producing summary statistics that describe the morphology and texture of solid masses. Relying on empirical distribution summaries as well as grey-level co-occurrence statistics, several approaches have been devised to characterize tissue density heterogeneity. This article proposes a novel decision-tree based approach which quantifies the tissue density heterogeneity of a given lesion through its resultant distribution of tree-structured dissimilarity metrics computed with least common ancestor trees under repeated pixel re-sampling. The methodology, based on statistics derived from Galton-Watson trees, produces metrics that are minimally correlated with existing features, adding new information to the feature space and improving quantitative characterization of the extent to which a CT image conveys heterogeneous density distribution. We demonstrate its practical application through a diagnostic study of adrenal lesions. Integrating the proposed with existing features identifies classifiers of three important lesion types; malignant from benign (AUC = 0.78), functioning from non-functioning (AUC = 0.93) and calcified from non-calcified (AUC of 1). 2018 /pmc/articles/PMC5749399/ /pubmed/29218883 Text en http://creativecommons.org/licenses/by-nc/4.0/ Open Access chapter published by World Scientific Publishing Company and distributed under the terms of the Creative Commons Attribution Non-Commercial (CC BY-NC) 4.0 License. |
spellingShingle | Article Shoemaker, Katherine Hobbs, Brian P. Bharath, Karthik Ng, Chaan S. Baladandayuthapani, Veerabhadran Tree-based Methods for Characterizing Tumor Density Heterogeneity |
title | Tree-based Methods for Characterizing Tumor Density Heterogeneity |
title_full | Tree-based Methods for Characterizing Tumor Density Heterogeneity |
title_fullStr | Tree-based Methods for Characterizing Tumor Density Heterogeneity |
title_full_unstemmed | Tree-based Methods for Characterizing Tumor Density Heterogeneity |
title_short | Tree-based Methods for Characterizing Tumor Density Heterogeneity |
title_sort | tree-based methods for characterizing tumor density heterogeneity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749399/ https://www.ncbi.nlm.nih.gov/pubmed/29218883 |
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