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Development of microsatellite markers for Cypripedium tibeticum (Orchidaceae) and their applicability to two related species(1)

PREMISE OF THE STUDY: To investigate genetic diversity and structure, microsatellite markers were developed and characterized for Cypripedium tibeticum, an endangered orchid species, and their utility tested in two relatives: C. flavum and C. bardolphianum. METHODS AND RESULTS: Candidate microsatell...

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Detalles Bibliográficos
Autores principales: Li, Jing, Luo, Yibo, Xu, Lingling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749819/
https://www.ncbi.nlm.nih.gov/pubmed/29299395
http://dx.doi.org/10.3732/apps.1700084
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author Li, Jing
Luo, Yibo
Xu, Lingling
author_facet Li, Jing
Luo, Yibo
Xu, Lingling
author_sort Li, Jing
collection PubMed
description PREMISE OF THE STUDY: To investigate genetic diversity and structure, microsatellite markers were developed and characterized for Cypripedium tibeticum, an endangered orchid species, and their utility tested in two relatives: C. flavum and C. bardolphianum. METHODS AND RESULTS: Candidate microsatellite loci were isolated based on next-generation sequencing. We identified 20 polymorphic loci with di- or trinucleotide repeats in three populations of C. tibeticum. Genotyping results showed the total number of alleles per locus varied from two to 21, and the observed and expected heterozygosity ranged from 0.261 to 0.967 and 0.441 to 0.960, respectively. Cross-species amplification showed most of the markers were applicable to C. flavum and C. bardolphianum. CONCLUSIONS: The 20 polymorphic microsatellite markers developed in this study are useful tools for studying the conservation genetics and phylogeography of C. tibeticum and its related species.
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spelling pubmed-57498192018-01-03 Development of microsatellite markers for Cypripedium tibeticum (Orchidaceae) and their applicability to two related species(1) Li, Jing Luo, Yibo Xu, Lingling Appl Plant Sci Primer Note PREMISE OF THE STUDY: To investigate genetic diversity and structure, microsatellite markers were developed and characterized for Cypripedium tibeticum, an endangered orchid species, and their utility tested in two relatives: C. flavum and C. bardolphianum. METHODS AND RESULTS: Candidate microsatellite loci were isolated based on next-generation sequencing. We identified 20 polymorphic loci with di- or trinucleotide repeats in three populations of C. tibeticum. Genotyping results showed the total number of alleles per locus varied from two to 21, and the observed and expected heterozygosity ranged from 0.261 to 0.967 and 0.441 to 0.960, respectively. Cross-species amplification showed most of the markers were applicable to C. flavum and C. bardolphianum. CONCLUSIONS: The 20 polymorphic microsatellite markers developed in this study are useful tools for studying the conservation genetics and phylogeography of C. tibeticum and its related species. Botanical Society of America 2017-12-21 /pmc/articles/PMC5749819/ /pubmed/29299395 http://dx.doi.org/10.3732/apps.1700084 Text en © 2017 Li et al. Published by the Botanical Society of America https://creativecommons.org/licenses/by-nc-sa/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC-BY-NC-SA 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) ), which permits unrestricted noncommercial use and redistribution provided that the original author and source are credited and the new work is distributed under the same license as the original.
spellingShingle Primer Note
Li, Jing
Luo, Yibo
Xu, Lingling
Development of microsatellite markers for Cypripedium tibeticum (Orchidaceae) and their applicability to two related species(1)
title Development of microsatellite markers for Cypripedium tibeticum (Orchidaceae) and their applicability to two related species(1)
title_full Development of microsatellite markers for Cypripedium tibeticum (Orchidaceae) and their applicability to two related species(1)
title_fullStr Development of microsatellite markers for Cypripedium tibeticum (Orchidaceae) and their applicability to two related species(1)
title_full_unstemmed Development of microsatellite markers for Cypripedium tibeticum (Orchidaceae) and their applicability to two related species(1)
title_short Development of microsatellite markers for Cypripedium tibeticum (Orchidaceae) and their applicability to two related species(1)
title_sort development of microsatellite markers for cypripedium tibeticum (orchidaceae) and their applicability to two related species(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749819/
https://www.ncbi.nlm.nih.gov/pubmed/29299395
http://dx.doi.org/10.3732/apps.1700084
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