Cargando…

Complete hazard ranking to analyze right-censored data: An ALS survival study

Survival analysis represents an important outcome measure in clinical research and clinical trials; further, survival ranking may offer additional advantages in clinical trials. In this study, we developed GuanRank, a non-parametric ranking-based technique to transform patients' survival data i...

Descripción completa

Detalles Bibliográficos
Autores principales: Huang, Zhengnan, Zhang, Hongjiu, Boss, Jonathan, Goutman, Stephen A., Mukherjee, Bhramar, Dinov, Ivo D., Guan, Yuanfang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749893/
https://www.ncbi.nlm.nih.gov/pubmed/29253881
http://dx.doi.org/10.1371/journal.pcbi.1005887
_version_ 1783289660621979648
author Huang, Zhengnan
Zhang, Hongjiu
Boss, Jonathan
Goutman, Stephen A.
Mukherjee, Bhramar
Dinov, Ivo D.
Guan, Yuanfang
author_facet Huang, Zhengnan
Zhang, Hongjiu
Boss, Jonathan
Goutman, Stephen A.
Mukherjee, Bhramar
Dinov, Ivo D.
Guan, Yuanfang
author_sort Huang, Zhengnan
collection PubMed
description Survival analysis represents an important outcome measure in clinical research and clinical trials; further, survival ranking may offer additional advantages in clinical trials. In this study, we developed GuanRank, a non-parametric ranking-based technique to transform patients' survival data into a linear space of hazard ranks. The transformation enables the utilization of machine learning base-learners including Gaussian process regression, Lasso, and random forest on survival data. The method was submitted to the DREAM Amyotrophic Lateral Sclerosis (ALS) Stratification Challenge. Ranked first place, the model gave more accurate ranking predictions on the PRO-ACT ALS dataset in comparison to Cox proportional hazard model. By utilizing right-censored data in its training process, the method demonstrated its state-of-the-art predictive power in ALS survival ranking. Its feature selection identified multiple important factors, some of which conflicts with previous studies.
format Online
Article
Text
id pubmed-5749893
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-57498932018-01-09 Complete hazard ranking to analyze right-censored data: An ALS survival study Huang, Zhengnan Zhang, Hongjiu Boss, Jonathan Goutman, Stephen A. Mukherjee, Bhramar Dinov, Ivo D. Guan, Yuanfang PLoS Comput Biol Research Article Survival analysis represents an important outcome measure in clinical research and clinical trials; further, survival ranking may offer additional advantages in clinical trials. In this study, we developed GuanRank, a non-parametric ranking-based technique to transform patients' survival data into a linear space of hazard ranks. The transformation enables the utilization of machine learning base-learners including Gaussian process regression, Lasso, and random forest on survival data. The method was submitted to the DREAM Amyotrophic Lateral Sclerosis (ALS) Stratification Challenge. Ranked first place, the model gave more accurate ranking predictions on the PRO-ACT ALS dataset in comparison to Cox proportional hazard model. By utilizing right-censored data in its training process, the method demonstrated its state-of-the-art predictive power in ALS survival ranking. Its feature selection identified multiple important factors, some of which conflicts with previous studies. Public Library of Science 2017-12-18 /pmc/articles/PMC5749893/ /pubmed/29253881 http://dx.doi.org/10.1371/journal.pcbi.1005887 Text en © 2017 Huang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Huang, Zhengnan
Zhang, Hongjiu
Boss, Jonathan
Goutman, Stephen A.
Mukherjee, Bhramar
Dinov, Ivo D.
Guan, Yuanfang
Complete hazard ranking to analyze right-censored data: An ALS survival study
title Complete hazard ranking to analyze right-censored data: An ALS survival study
title_full Complete hazard ranking to analyze right-censored data: An ALS survival study
title_fullStr Complete hazard ranking to analyze right-censored data: An ALS survival study
title_full_unstemmed Complete hazard ranking to analyze right-censored data: An ALS survival study
title_short Complete hazard ranking to analyze right-censored data: An ALS survival study
title_sort complete hazard ranking to analyze right-censored data: an als survival study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749893/
https://www.ncbi.nlm.nih.gov/pubmed/29253881
http://dx.doi.org/10.1371/journal.pcbi.1005887
work_keys_str_mv AT huangzhengnan completehazardrankingtoanalyzerightcensoreddataanalssurvivalstudy
AT zhanghongjiu completehazardrankingtoanalyzerightcensoreddataanalssurvivalstudy
AT bossjonathan completehazardrankingtoanalyzerightcensoreddataanalssurvivalstudy
AT goutmanstephena completehazardrankingtoanalyzerightcensoreddataanalssurvivalstudy
AT mukherjeebhramar completehazardrankingtoanalyzerightcensoreddataanalssurvivalstudy
AT dinovivod completehazardrankingtoanalyzerightcensoreddataanalssurvivalstudy
AT guanyuanfang completehazardrankingtoanalyzerightcensoreddataanalssurvivalstudy
AT completehazardrankingtoanalyzerightcensoreddataanalssurvivalstudy