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Complete hazard ranking to analyze right-censored data: An ALS survival study
Survival analysis represents an important outcome measure in clinical research and clinical trials; further, survival ranking may offer additional advantages in clinical trials. In this study, we developed GuanRank, a non-parametric ranking-based technique to transform patients' survival data i...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749893/ https://www.ncbi.nlm.nih.gov/pubmed/29253881 http://dx.doi.org/10.1371/journal.pcbi.1005887 |
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author | Huang, Zhengnan Zhang, Hongjiu Boss, Jonathan Goutman, Stephen A. Mukherjee, Bhramar Dinov, Ivo D. Guan, Yuanfang |
author_facet | Huang, Zhengnan Zhang, Hongjiu Boss, Jonathan Goutman, Stephen A. Mukherjee, Bhramar Dinov, Ivo D. Guan, Yuanfang |
author_sort | Huang, Zhengnan |
collection | PubMed |
description | Survival analysis represents an important outcome measure in clinical research and clinical trials; further, survival ranking may offer additional advantages in clinical trials. In this study, we developed GuanRank, a non-parametric ranking-based technique to transform patients' survival data into a linear space of hazard ranks. The transformation enables the utilization of machine learning base-learners including Gaussian process regression, Lasso, and random forest on survival data. The method was submitted to the DREAM Amyotrophic Lateral Sclerosis (ALS) Stratification Challenge. Ranked first place, the model gave more accurate ranking predictions on the PRO-ACT ALS dataset in comparison to Cox proportional hazard model. By utilizing right-censored data in its training process, the method demonstrated its state-of-the-art predictive power in ALS survival ranking. Its feature selection identified multiple important factors, some of which conflicts with previous studies. |
format | Online Article Text |
id | pubmed-5749893 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-57498932018-01-09 Complete hazard ranking to analyze right-censored data: An ALS survival study Huang, Zhengnan Zhang, Hongjiu Boss, Jonathan Goutman, Stephen A. Mukherjee, Bhramar Dinov, Ivo D. Guan, Yuanfang PLoS Comput Biol Research Article Survival analysis represents an important outcome measure in clinical research and clinical trials; further, survival ranking may offer additional advantages in clinical trials. In this study, we developed GuanRank, a non-parametric ranking-based technique to transform patients' survival data into a linear space of hazard ranks. The transformation enables the utilization of machine learning base-learners including Gaussian process regression, Lasso, and random forest on survival data. The method was submitted to the DREAM Amyotrophic Lateral Sclerosis (ALS) Stratification Challenge. Ranked first place, the model gave more accurate ranking predictions on the PRO-ACT ALS dataset in comparison to Cox proportional hazard model. By utilizing right-censored data in its training process, the method demonstrated its state-of-the-art predictive power in ALS survival ranking. Its feature selection identified multiple important factors, some of which conflicts with previous studies. Public Library of Science 2017-12-18 /pmc/articles/PMC5749893/ /pubmed/29253881 http://dx.doi.org/10.1371/journal.pcbi.1005887 Text en © 2017 Huang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Huang, Zhengnan Zhang, Hongjiu Boss, Jonathan Goutman, Stephen A. Mukherjee, Bhramar Dinov, Ivo D. Guan, Yuanfang Complete hazard ranking to analyze right-censored data: An ALS survival study |
title | Complete hazard ranking to analyze right-censored data: An ALS survival study |
title_full | Complete hazard ranking to analyze right-censored data: An ALS survival study |
title_fullStr | Complete hazard ranking to analyze right-censored data: An ALS survival study |
title_full_unstemmed | Complete hazard ranking to analyze right-censored data: An ALS survival study |
title_short | Complete hazard ranking to analyze right-censored data: An ALS survival study |
title_sort | complete hazard ranking to analyze right-censored data: an als survival study |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749893/ https://www.ncbi.nlm.nih.gov/pubmed/29253881 http://dx.doi.org/10.1371/journal.pcbi.1005887 |
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