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LIVIVO – the Vertical Search Engine for Life Sciences
The explosive growth of literature and data in the life sciences challenges researchers to keep track of current advancements in their disciplines. Novel approaches in the life science like the One Health paradigm require integrated methodologies in order to link and connect heterogeneous informatio...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5750838/ https://www.ncbi.nlm.nih.gov/pubmed/29368755 http://dx.doi.org/10.1007/s13222-016-0245-2 |
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author | Müller, Bernd Poley, Christoph Pössel, Jana Hagelstein, Alexandra Gübitz, Thomas |
author_facet | Müller, Bernd Poley, Christoph Pössel, Jana Hagelstein, Alexandra Gübitz, Thomas |
author_sort | Müller, Bernd |
collection | PubMed |
description | The explosive growth of literature and data in the life sciences challenges researchers to keep track of current advancements in their disciplines. Novel approaches in the life science like the One Health paradigm require integrated methodologies in order to link and connect heterogeneous information from databases and literature resources. Current publications in the life sciences are increasingly characterized by the employment of trans-disciplinary methodologies comprising molecular and cell biology, genetics, genomic, epigenomic, transcriptional and proteomic high throughput technologies with data from humans, plants, and animals. The literature search engine LIVIVO empowers retrieval functionality by incorporating various literature resources from medicine, health, environment, agriculture and nutrition. LIVIVO is developed in-house by ZB MED – Information Centre for Life Sciences. It provides a user-friendly and usability-tested search interface with a corpus of 55 Million citations derived from 50 databases. Standardized application programming interfaces are available for data export and high throughput retrieval. The search functions allow for semantic retrieval with filtering options based on life science entities. The service oriented architecture of LIVIVO uses four different implementation layers to deliver search services. A Knowledge Environment is developed by ZB MED to deal with the heterogeneity of data as an integrative approach to model, store, and link semantic concepts within literature resources and databases. Future work will focus on the exploitation of life science ontologies and on the employment of NLP technologies in order to improve query expansion, filters in faceted search, and concept based relevancy rankings in LIVIVO. |
format | Online Article Text |
id | pubmed-5750838 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-57508382018-01-22 LIVIVO – the Vertical Search Engine for Life Sciences Müller, Bernd Poley, Christoph Pössel, Jana Hagelstein, Alexandra Gübitz, Thomas Datenbank Spektrum Schwerpunktbeitrag The explosive growth of literature and data in the life sciences challenges researchers to keep track of current advancements in their disciplines. Novel approaches in the life science like the One Health paradigm require integrated methodologies in order to link and connect heterogeneous information from databases and literature resources. Current publications in the life sciences are increasingly characterized by the employment of trans-disciplinary methodologies comprising molecular and cell biology, genetics, genomic, epigenomic, transcriptional and proteomic high throughput technologies with data from humans, plants, and animals. The literature search engine LIVIVO empowers retrieval functionality by incorporating various literature resources from medicine, health, environment, agriculture and nutrition. LIVIVO is developed in-house by ZB MED – Information Centre for Life Sciences. It provides a user-friendly and usability-tested search interface with a corpus of 55 Million citations derived from 50 databases. Standardized application programming interfaces are available for data export and high throughput retrieval. The search functions allow for semantic retrieval with filtering options based on life science entities. The service oriented architecture of LIVIVO uses four different implementation layers to deliver search services. A Knowledge Environment is developed by ZB MED to deal with the heterogeneity of data as an integrative approach to model, store, and link semantic concepts within literature resources and databases. Future work will focus on the exploitation of life science ontologies and on the employment of NLP technologies in order to improve query expansion, filters in faceted search, and concept based relevancy rankings in LIVIVO. Springer Berlin Heidelberg 2017-01-18 2017 /pmc/articles/PMC5750838/ /pubmed/29368755 http://dx.doi.org/10.1007/s13222-016-0245-2 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Schwerpunktbeitrag Müller, Bernd Poley, Christoph Pössel, Jana Hagelstein, Alexandra Gübitz, Thomas LIVIVO – the Vertical Search Engine for Life Sciences |
title | LIVIVO – the Vertical Search Engine for Life Sciences |
title_full | LIVIVO – the Vertical Search Engine for Life Sciences |
title_fullStr | LIVIVO – the Vertical Search Engine for Life Sciences |
title_full_unstemmed | LIVIVO – the Vertical Search Engine for Life Sciences |
title_short | LIVIVO – the Vertical Search Engine for Life Sciences |
title_sort | livivo – the vertical search engine for life sciences |
topic | Schwerpunktbeitrag |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5750838/ https://www.ncbi.nlm.nih.gov/pubmed/29368755 http://dx.doi.org/10.1007/s13222-016-0245-2 |
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