Cargando…

Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence

BACKGROUND: Positive semi-definiteness is a critical property in kernel methods for Support Vector Machine (SVM) by which efficient solutions can be guaranteed through convex quadratic programming. However, a lot of similarity functions in applications do not produce positive semi-definite kernels....

Descripción completa

Detalles Bibliográficos
Autores principales: Jiang, Hao, Ching, Wai-Ki, Qiu, Yushan, Cheng, Xiao-Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751553/
https://www.ncbi.nlm.nih.gov/pubmed/29297357
http://dx.doi.org/10.1186/s12918-017-0479-0
_version_ 1783289970250743808
author Jiang, Hao
Ching, Wai-Ki
Qiu, Yushan
Cheng, Xiao-Qing
author_facet Jiang, Hao
Ching, Wai-Ki
Qiu, Yushan
Cheng, Xiao-Qing
author_sort Jiang, Hao
collection PubMed
description BACKGROUND: Positive semi-definiteness is a critical property in kernel methods for Support Vector Machine (SVM) by which efficient solutions can be guaranteed through convex quadratic programming. However, a lot of similarity functions in applications do not produce positive semi-definite kernels. METHODS: We propose projection method by constructing projection matrix on indefinite kernels. As a generalization of the spectrum method (denoising method and flipping method), the projection method shows better or comparable performance comparing to the corresponding indefinite kernel methods on a number of real world data sets. Under the Bregman matrix divergence theory, we can find suggested optimal λ in projection method using unconstrained optimization in kernel learning. In this paper we focus on optimal λ determination, in the pursuit of precise optimal λ determination method in unconstrained optimization framework. We developed a perturbed von-Neumann divergence to measure kernel relationships. RESULTS: We compared optimal λ determination with Logdet Divergence and perturbed von-Neumann Divergence, aiming at finding better λ in projection method. Results on a number of real world data sets show that projection method with optimal λ by Logdet divergence demonstrate near optimal performance. And the perturbed von-Neumann Divergence can help determine a relatively better optimal projection method. CONCLUSIONS: Projection method ia easy to use for dealing with indefinite kernels. And the parameter embedded in the method can be determined through unconstrained optimization under Bregman matrix divergence theory. This may provide a new way in kernel SVMs for varied objectives. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12918-017-0479-0) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-5751553
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-57515532018-01-05 Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence Jiang, Hao Ching, Wai-Ki Qiu, Yushan Cheng, Xiao-Qing BMC Syst Biol Methodology BACKGROUND: Positive semi-definiteness is a critical property in kernel methods for Support Vector Machine (SVM) by which efficient solutions can be guaranteed through convex quadratic programming. However, a lot of similarity functions in applications do not produce positive semi-definite kernels. METHODS: We propose projection method by constructing projection matrix on indefinite kernels. As a generalization of the spectrum method (denoising method and flipping method), the projection method shows better or comparable performance comparing to the corresponding indefinite kernel methods on a number of real world data sets. Under the Bregman matrix divergence theory, we can find suggested optimal λ in projection method using unconstrained optimization in kernel learning. In this paper we focus on optimal λ determination, in the pursuit of precise optimal λ determination method in unconstrained optimization framework. We developed a perturbed von-Neumann divergence to measure kernel relationships. RESULTS: We compared optimal λ determination with Logdet Divergence and perturbed von-Neumann Divergence, aiming at finding better λ in projection method. Results on a number of real world data sets show that projection method with optimal λ by Logdet divergence demonstrate near optimal performance. And the perturbed von-Neumann Divergence can help determine a relatively better optimal projection method. CONCLUSIONS: Projection method ia easy to use for dealing with indefinite kernels. And the parameter embedded in the method can be determined through unconstrained optimization under Bregman matrix divergence theory. This may provide a new way in kernel SVMs for varied objectives. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12918-017-0479-0) contains supplementary material, which is available to authorized users. BioMed Central 2017-12-14 /pmc/articles/PMC5751553/ /pubmed/29297357 http://dx.doi.org/10.1186/s12918-017-0479-0 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology
Jiang, Hao
Ching, Wai-Ki
Qiu, Yushan
Cheng, Xiao-Qing
Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence
title Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence
title_full Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence
title_fullStr Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence
title_full_unstemmed Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence
title_short Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence
title_sort optimal projection method determination by logdet divergence and perturbed von-neumann divergence
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751553/
https://www.ncbi.nlm.nih.gov/pubmed/29297357
http://dx.doi.org/10.1186/s12918-017-0479-0
work_keys_str_mv AT jianghao optimalprojectionmethoddeterminationbylogdetdivergenceandperturbedvonneumanndivergence
AT chingwaiki optimalprojectionmethoddeterminationbylogdetdivergenceandperturbedvonneumanndivergence
AT qiuyushan optimalprojectionmethoddeterminationbylogdetdivergenceandperturbedvonneumanndivergence
AT chengxiaoqing optimalprojectionmethoddeterminationbylogdetdivergenceandperturbedvonneumanndivergence