Cargando…

Texture based skin lesion abruptness quantification to detect malignancy

BACKGROUND: Abruptness of pigment patterns at the periphery of a skin lesion is one of the most important dermoscopic features for detection of malignancy. In current clinical setting, abrupt cutoff of a skin lesion determined by an examination of a dermatologist. This process is subjective, nonquan...

Descripción completa

Detalles Bibliográficos
Autores principales: Erol, Recep, Bayraktar, Mustafa, Kockara, Sinan, Kaya, Sertan, Halic, Tansel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751661/
https://www.ncbi.nlm.nih.gov/pubmed/29297290
http://dx.doi.org/10.1186/s12859-017-1892-5
_version_ 1783289995468996608
author Erol, Recep
Bayraktar, Mustafa
Kockara, Sinan
Kaya, Sertan
Halic, Tansel
author_facet Erol, Recep
Bayraktar, Mustafa
Kockara, Sinan
Kaya, Sertan
Halic, Tansel
author_sort Erol, Recep
collection PubMed
description BACKGROUND: Abruptness of pigment patterns at the periphery of a skin lesion is one of the most important dermoscopic features for detection of malignancy. In current clinical setting, abrupt cutoff of a skin lesion determined by an examination of a dermatologist. This process is subjective, nonquantitative, and error-prone. We present an improved computational model to quantitatively measure abruptness of a skin lesion over our previous method. To achieve this, we quantitatively analyze the texture features of a region within the lesion boundary. This region is bounded by an interior border line of the lesion boundary which is determined using level set propagation (LSP) method. This method provides a fast border contraction without a need for extensive boolean operations. Then, we build feature vectors of homogeneity, standard deviation of pixel values, and mean of the pixel values of the region between the contracted border and the original border. These vectors are then classified using neural networks (NN) and SVM classifiers. RESULTS: As lower homogeneity indicates sharp cutoffs, suggesting melanoma, we carried out our experiments on two dermoscopy image datasets, which consist of 800 benign and 200 malignant melanoma cases. LSP method helped produce better results than Kaya et al., 2016 study. By using texture homogeneity at the periphery of a lesion border determined by LSP, as a classification results, we obtained 87% f1-score and 78% specificity; that we obtained better results than in the previous study. We also compared the performances of two different NN classifiers and support vector machine classifier. The best results obtained using combination of RGB color spaces with the fully-connected multi-hidden layer NN. CONCLUSIONS: Computational results also show that skin lesion abrupt cutoff is a reliable indicator of malignancy. Results show that computational model of texture homogeneity along the periphery of skin lesion borders based on LSP is an effective way of quantitatively measuring abrupt cutoff of a lesion.
format Online
Article
Text
id pubmed-5751661
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-57516612018-01-05 Texture based skin lesion abruptness quantification to detect malignancy Erol, Recep Bayraktar, Mustafa Kockara, Sinan Kaya, Sertan Halic, Tansel BMC Bioinformatics Research BACKGROUND: Abruptness of pigment patterns at the periphery of a skin lesion is one of the most important dermoscopic features for detection of malignancy. In current clinical setting, abrupt cutoff of a skin lesion determined by an examination of a dermatologist. This process is subjective, nonquantitative, and error-prone. We present an improved computational model to quantitatively measure abruptness of a skin lesion over our previous method. To achieve this, we quantitatively analyze the texture features of a region within the lesion boundary. This region is bounded by an interior border line of the lesion boundary which is determined using level set propagation (LSP) method. This method provides a fast border contraction without a need for extensive boolean operations. Then, we build feature vectors of homogeneity, standard deviation of pixel values, and mean of the pixel values of the region between the contracted border and the original border. These vectors are then classified using neural networks (NN) and SVM classifiers. RESULTS: As lower homogeneity indicates sharp cutoffs, suggesting melanoma, we carried out our experiments on two dermoscopy image datasets, which consist of 800 benign and 200 malignant melanoma cases. LSP method helped produce better results than Kaya et al., 2016 study. By using texture homogeneity at the periphery of a lesion border determined by LSP, as a classification results, we obtained 87% f1-score and 78% specificity; that we obtained better results than in the previous study. We also compared the performances of two different NN classifiers and support vector machine classifier. The best results obtained using combination of RGB color spaces with the fully-connected multi-hidden layer NN. CONCLUSIONS: Computational results also show that skin lesion abrupt cutoff is a reliable indicator of malignancy. Results show that computational model of texture homogeneity along the periphery of skin lesion borders based on LSP is an effective way of quantitatively measuring abrupt cutoff of a lesion. BioMed Central 2017-12-28 /pmc/articles/PMC5751661/ /pubmed/29297290 http://dx.doi.org/10.1186/s12859-017-1892-5 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Erol, Recep
Bayraktar, Mustafa
Kockara, Sinan
Kaya, Sertan
Halic, Tansel
Texture based skin lesion abruptness quantification to detect malignancy
title Texture based skin lesion abruptness quantification to detect malignancy
title_full Texture based skin lesion abruptness quantification to detect malignancy
title_fullStr Texture based skin lesion abruptness quantification to detect malignancy
title_full_unstemmed Texture based skin lesion abruptness quantification to detect malignancy
title_short Texture based skin lesion abruptness quantification to detect malignancy
title_sort texture based skin lesion abruptness quantification to detect malignancy
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751661/
https://www.ncbi.nlm.nih.gov/pubmed/29297290
http://dx.doi.org/10.1186/s12859-017-1892-5
work_keys_str_mv AT erolrecep texturebasedskinlesionabruptnessquantificationtodetectmalignancy
AT bayraktarmustafa texturebasedskinlesionabruptnessquantificationtodetectmalignancy
AT kockarasinan texturebasedskinlesionabruptnessquantificationtodetectmalignancy
AT kayasertan texturebasedskinlesionabruptnessquantificationtodetectmalignancy
AT halictansel texturebasedskinlesionabruptnessquantificationtodetectmalignancy