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Human Ageing Genomic Resources: new and updated databases

In spite of a growing body of research and data, human ageing remains a poorly understood process. Over 10 years ago we developed the Human Ageing Genomic Resources (HAGR), a collection of databases and tools for studying the biology and genetics of ageing. Here, we present HAGR’s main functionaliti...

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Autores principales: Tacutu, Robi, Thornton, Daniel, Johnson, Emily, Budovsky, Arie, Barardo, Diogo, Craig, Thomas, Diana, Eugene, Lehmann, Gilad, Toren, Dmitri, Wang, Jingwei, Fraifeld, Vadim E, de Magalhães, João P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753192/
https://www.ncbi.nlm.nih.gov/pubmed/29121237
http://dx.doi.org/10.1093/nar/gkx1042
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author Tacutu, Robi
Thornton, Daniel
Johnson, Emily
Budovsky, Arie
Barardo, Diogo
Craig, Thomas
Diana, Eugene
Lehmann, Gilad
Toren, Dmitri
Wang, Jingwei
Fraifeld, Vadim E
de Magalhães, João P
author_facet Tacutu, Robi
Thornton, Daniel
Johnson, Emily
Budovsky, Arie
Barardo, Diogo
Craig, Thomas
Diana, Eugene
Lehmann, Gilad
Toren, Dmitri
Wang, Jingwei
Fraifeld, Vadim E
de Magalhães, João P
author_sort Tacutu, Robi
collection PubMed
description In spite of a growing body of research and data, human ageing remains a poorly understood process. Over 10 years ago we developed the Human Ageing Genomic Resources (HAGR), a collection of databases and tools for studying the biology and genetics of ageing. Here, we present HAGR’s main functionalities, highlighting new additions and improvements. HAGR consists of six core databases: (i) the GenAge database of ageing-related genes, in turn composed of a dataset of >300 human ageing-related genes and a dataset with >2000 genes associated with ageing or longevity in model organisms; (ii) the AnAge database of animal ageing and longevity, featuring >4000 species; (iii) the GenDR database with >200 genes associated with the life-extending effects of dietary restriction; (iv) the LongevityMap database of human genetic association studies of longevity with >500 entries; (v) the DrugAge database with >400 ageing or longevity-associated drugs or compounds; (vi) the CellAge database with >200 genes associated with cell senescence. All our databases are manually curated by experts and regularly updated to ensure a high quality data. Cross-links across our databases and to external resources help researchers locate and integrate relevant information. HAGR is freely available online (http://genomics.senescence.info/).
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spelling pubmed-57531922018-01-05 Human Ageing Genomic Resources: new and updated databases Tacutu, Robi Thornton, Daniel Johnson, Emily Budovsky, Arie Barardo, Diogo Craig, Thomas Diana, Eugene Lehmann, Gilad Toren, Dmitri Wang, Jingwei Fraifeld, Vadim E de Magalhães, João P Nucleic Acids Res Database Issue In spite of a growing body of research and data, human ageing remains a poorly understood process. Over 10 years ago we developed the Human Ageing Genomic Resources (HAGR), a collection of databases and tools for studying the biology and genetics of ageing. Here, we present HAGR’s main functionalities, highlighting new additions and improvements. HAGR consists of six core databases: (i) the GenAge database of ageing-related genes, in turn composed of a dataset of >300 human ageing-related genes and a dataset with >2000 genes associated with ageing or longevity in model organisms; (ii) the AnAge database of animal ageing and longevity, featuring >4000 species; (iii) the GenDR database with >200 genes associated with the life-extending effects of dietary restriction; (iv) the LongevityMap database of human genetic association studies of longevity with >500 entries; (v) the DrugAge database with >400 ageing or longevity-associated drugs or compounds; (vi) the CellAge database with >200 genes associated with cell senescence. All our databases are manually curated by experts and regularly updated to ensure a high quality data. Cross-links across our databases and to external resources help researchers locate and integrate relevant information. HAGR is freely available online (http://genomics.senescence.info/). Oxford University Press 2018-01-04 2017-11-07 /pmc/articles/PMC5753192/ /pubmed/29121237 http://dx.doi.org/10.1093/nar/gkx1042 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Tacutu, Robi
Thornton, Daniel
Johnson, Emily
Budovsky, Arie
Barardo, Diogo
Craig, Thomas
Diana, Eugene
Lehmann, Gilad
Toren, Dmitri
Wang, Jingwei
Fraifeld, Vadim E
de Magalhães, João P
Human Ageing Genomic Resources: new and updated databases
title Human Ageing Genomic Resources: new and updated databases
title_full Human Ageing Genomic Resources: new and updated databases
title_fullStr Human Ageing Genomic Resources: new and updated databases
title_full_unstemmed Human Ageing Genomic Resources: new and updated databases
title_short Human Ageing Genomic Resources: new and updated databases
title_sort human ageing genomic resources: new and updated databases
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753192/
https://www.ncbi.nlm.nih.gov/pubmed/29121237
http://dx.doi.org/10.1093/nar/gkx1042
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