The MetaCyc database of metabolic pathways and enzymes

MetaCyc (https://MetaCyc.org) is a comprehensive reference database of metabolic pathways and enzymes from all domains of life. It contains more than 2570 pathways derived from >54 000 publications, making it the largest curated collection of metabolic pathways. The data in MetaCyc is strictly ev...

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Autores principales: Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Database Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753197/
https://www.ncbi.nlm.nih.gov/pubmed/29059334
http://dx.doi.org/10.1093/nar/gkx935
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author Caspi, Ron
Billington, Richard
Fulcher, Carol A
Keseler, Ingrid M
Kothari, Anamika
Krummenacker, Markus
Latendresse, Mario
Midford, Peter E
Ong, Quang
Ong, Wai Kit
Paley, Suzanne
Subhraveti, Pallavi
Karp, Peter D
author_facet Caspi, Ron
Billington, Richard
Fulcher, Carol A
Keseler, Ingrid M
Kothari, Anamika
Krummenacker, Markus
Latendresse, Mario
Midford, Peter E
Ong, Quang
Ong, Wai Kit
Paley, Suzanne
Subhraveti, Pallavi
Karp, Peter D
author_sort Caspi, Ron
collection PubMed
description MetaCyc (https://MetaCyc.org) is a comprehensive reference database of metabolic pathways and enzymes from all domains of life. It contains more than 2570 pathways derived from >54 000 publications, making it the largest curated collection of metabolic pathways. The data in MetaCyc is strictly evidence-based and richly curated, resulting in an encyclopedic reference tool for metabolism. MetaCyc is also used as a knowledge base for generating thousands of organism-specific Pathway/Genome Databases (PGDBs), which are available in the BioCyc (https://BioCyc.org) and other PGDB collections. This article provides an update on the developments in MetaCyc during the past two years, including the expansion of data and addition of new features.
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spelling pubmed-57531972018-01-05 The MetaCyc database of metabolic pathways and enzymes Caspi, Ron Billington, Richard Fulcher, Carol A Keseler, Ingrid M Kothari, Anamika Krummenacker, Markus Latendresse, Mario Midford, Peter E Ong, Quang Ong, Wai Kit Paley, Suzanne Subhraveti, Pallavi Karp, Peter D Nucleic Acids Res Database Issue MetaCyc (https://MetaCyc.org) is a comprehensive reference database of metabolic pathways and enzymes from all domains of life. It contains more than 2570 pathways derived from >54 000 publications, making it the largest curated collection of metabolic pathways. The data in MetaCyc is strictly evidence-based and richly curated, resulting in an encyclopedic reference tool for metabolism. MetaCyc is also used as a knowledge base for generating thousands of organism-specific Pathway/Genome Databases (PGDBs), which are available in the BioCyc (https://BioCyc.org) and other PGDB collections. This article provides an update on the developments in MetaCyc during the past two years, including the expansion of data and addition of new features. Oxford University Press 2018-01-04 2017-10-20 /pmc/articles/PMC5753197/ /pubmed/29059334 http://dx.doi.org/10.1093/nar/gkx935 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Caspi, Ron
Billington, Richard
Fulcher, Carol A
Keseler, Ingrid M
Kothari, Anamika
Krummenacker, Markus
Latendresse, Mario
Midford, Peter E
Ong, Quang
Ong, Wai Kit
Paley, Suzanne
Subhraveti, Pallavi
Karp, Peter D
The MetaCyc database of metabolic pathways and enzymes
title The MetaCyc database of metabolic pathways and enzymes
title_full The MetaCyc database of metabolic pathways and enzymes
title_fullStr The MetaCyc database of metabolic pathways and enzymes
title_full_unstemmed The MetaCyc database of metabolic pathways and enzymes
title_short The MetaCyc database of metabolic pathways and enzymes
title_sort metacyc database of metabolic pathways and enzymes
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753197/
https://www.ncbi.nlm.nih.gov/pubmed/29059334
http://dx.doi.org/10.1093/nar/gkx935
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