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Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing
Since 2010, the Genomicus web server is available online at http://genomicus.biologie.ens.fr/genomicus. This graphical browser provides access to comparative genomic analyses in four different phyla (Vertebrate, Plants, Fungi, and non vertebrate Metazoans). Users can analyse genomic information from...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753199/ https://www.ncbi.nlm.nih.gov/pubmed/29087490 http://dx.doi.org/10.1093/nar/gkx1003 |
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author | Nguyen, Nga Thi Thuy Vincens, Pierre Roest Crollius, Hugues Louis, Alexandra |
author_facet | Nguyen, Nga Thi Thuy Vincens, Pierre Roest Crollius, Hugues Louis, Alexandra |
author_sort | Nguyen, Nga Thi Thuy |
collection | PubMed |
description | Since 2010, the Genomicus web server is available online at http://genomicus.biologie.ens.fr/genomicus. This graphical browser provides access to comparative genomic analyses in four different phyla (Vertebrate, Plants, Fungi, and non vertebrate Metazoans). Users can analyse genomic information from extant species, as well as ancestral gene content and gene order for vertebrates and flowering plants, in an integrated evolutionary context. New analyses and visualization tools have recently been implemented in Genomicus Vertebrate. Karyotype structures from several genomes can now be compared along an evolutionary pathway (Multi-KaryotypeView), and synteny blocks can be computed and visualized between any two genomes (PhylDiagView). |
format | Online Article Text |
id | pubmed-5753199 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57531992018-01-05 Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing Nguyen, Nga Thi Thuy Vincens, Pierre Roest Crollius, Hugues Louis, Alexandra Nucleic Acids Res Database Issue Since 2010, the Genomicus web server is available online at http://genomicus.biologie.ens.fr/genomicus. This graphical browser provides access to comparative genomic analyses in four different phyla (Vertebrate, Plants, Fungi, and non vertebrate Metazoans). Users can analyse genomic information from extant species, as well as ancestral gene content and gene order for vertebrates and flowering plants, in an integrated evolutionary context. New analyses and visualization tools have recently been implemented in Genomicus Vertebrate. Karyotype structures from several genomes can now be compared along an evolutionary pathway (Multi-KaryotypeView), and synteny blocks can be computed and visualized between any two genomes (PhylDiagView). Oxford University Press 2018-01-04 2017-10-26 /pmc/articles/PMC5753199/ /pubmed/29087490 http://dx.doi.org/10.1093/nar/gkx1003 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Nguyen, Nga Thi Thuy Vincens, Pierre Roest Crollius, Hugues Louis, Alexandra Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing |
title | Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing |
title_full | Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing |
title_fullStr | Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing |
title_full_unstemmed | Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing |
title_short | Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing |
title_sort | genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753199/ https://www.ncbi.nlm.nih.gov/pubmed/29087490 http://dx.doi.org/10.1093/nar/gkx1003 |
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