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ECOdrug: a database connecting drugs and conservation of their targets across species
Pharmaceuticals are designed to interact with specific molecular targets in humans and these targets generally have orthologs in other species. This provides opportunities for the drug discovery community to use alternative model species for drug development. It also means, however, there is potenti...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753218/ https://www.ncbi.nlm.nih.gov/pubmed/29140522 http://dx.doi.org/10.1093/nar/gkx1024 |
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author | Verbruggen, Bas Gunnarsson, Lina Kristiansson, Erik Österlund, Tobias Owen, Stewart F Snape, Jason R Tyler, Charles R |
author_facet | Verbruggen, Bas Gunnarsson, Lina Kristiansson, Erik Österlund, Tobias Owen, Stewart F Snape, Jason R Tyler, Charles R |
author_sort | Verbruggen, Bas |
collection | PubMed |
description | Pharmaceuticals are designed to interact with specific molecular targets in humans and these targets generally have orthologs in other species. This provides opportunities for the drug discovery community to use alternative model species for drug development. It also means, however, there is potential for mode of action related effects in non-target wildlife species as many pharmaceuticals reach the environment through patient use and manufacturing wastes. Acquiring insight in drug target ortholog predictions across species and taxonomic groups has proven difficult because of the lack of an optimal strategy and because necessary information is spread across multiple and diverse sources and platforms. We introduce a new research platform tool, ECOdrug, that reliably connects drugs to their protein targets across divergent species. It harmonizes ortholog predictions from multiple sources via a simple user interface underpinning critical applications for a wide range of studies in pharmacology, ecotoxicology and comparative evolutionary biology. ECOdrug can be used to identify species with drug targets and identify drugs that interact with those targets. As such, it can be applied to support intelligent targeted drug safety testing by ensuring appropriate and relevant species are selected in ecological risk assessments. ECOdrug is freely accessible and available at: http://www.ecodrug.org. |
format | Online Article Text |
id | pubmed-5753218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57532182018-01-05 ECOdrug: a database connecting drugs and conservation of their targets across species Verbruggen, Bas Gunnarsson, Lina Kristiansson, Erik Österlund, Tobias Owen, Stewart F Snape, Jason R Tyler, Charles R Nucleic Acids Res Database Issue Pharmaceuticals are designed to interact with specific molecular targets in humans and these targets generally have orthologs in other species. This provides opportunities for the drug discovery community to use alternative model species for drug development. It also means, however, there is potential for mode of action related effects in non-target wildlife species as many pharmaceuticals reach the environment through patient use and manufacturing wastes. Acquiring insight in drug target ortholog predictions across species and taxonomic groups has proven difficult because of the lack of an optimal strategy and because necessary information is spread across multiple and diverse sources and platforms. We introduce a new research platform tool, ECOdrug, that reliably connects drugs to their protein targets across divergent species. It harmonizes ortholog predictions from multiple sources via a simple user interface underpinning critical applications for a wide range of studies in pharmacology, ecotoxicology and comparative evolutionary biology. ECOdrug can be used to identify species with drug targets and identify drugs that interact with those targets. As such, it can be applied to support intelligent targeted drug safety testing by ensuring appropriate and relevant species are selected in ecological risk assessments. ECOdrug is freely accessible and available at: http://www.ecodrug.org. Oxford University Press 2018-01-04 2017-11-11 /pmc/articles/PMC5753218/ /pubmed/29140522 http://dx.doi.org/10.1093/nar/gkx1024 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Verbruggen, Bas Gunnarsson, Lina Kristiansson, Erik Österlund, Tobias Owen, Stewart F Snape, Jason R Tyler, Charles R ECOdrug: a database connecting drugs and conservation of their targets across species |
title | ECOdrug: a database connecting drugs and conservation of their targets across species |
title_full | ECOdrug: a database connecting drugs and conservation of their targets across species |
title_fullStr | ECOdrug: a database connecting drugs and conservation of their targets across species |
title_full_unstemmed | ECOdrug: a database connecting drugs and conservation of their targets across species |
title_short | ECOdrug: a database connecting drugs and conservation of their targets across species |
title_sort | ecodrug: a database connecting drugs and conservation of their targets across species |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753218/ https://www.ncbi.nlm.nih.gov/pubmed/29140522 http://dx.doi.org/10.1093/nar/gkx1024 |
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