Cargando…

ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences

A holistic understanding of environmental communities is the new challenge of metagenomics. Accordingly, the amplicon-based or metabarcoding approach, largely applied to investigate bacterial microbiomes, is moving to the eukaryotic world too. Indeed, the analysis of metabarcoding data may provide a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Santamaria, Monica, Fosso, Bruno, Licciulli, Flavio, Balech, Bachir, Larini, Ilaria, Grillo, Giorgio, De Caro, Giorgio, Liuni, Sabino, Pesole, Graziano
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Database Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753230/ https://www.ncbi.nlm.nih.gov/pubmed/29036529 http://dx.doi.org/10.1093/nar/gkx855

Ejemplares similares

ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy
por: Tangaro, Marco A, et al.
Publicado: (2021)

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
por: Mignone, Flavio, et al.
Publicado: (2005)

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
por: Grillo, Giorgio, et al.
Publicado: (2010)

MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences
por: Balech, Bachir, et al.
Publicado: (2022)

Arena-Idb: a platform to build human non-coding RNA interaction networks
por: Bonnici, Vincenzo, et al.
Publicado: (2018)

Evaluating the Efficiency of DNA Metabarcoding to Analyze the Diet of Hippocampus guttulatus (Teleostea: Syngnathidae)
por: Lazic, Tamara, et al.
Publicado: (2021)

Untranslated regions of mRNAs
por: Mignone, Flavio, et al.
Publicado: (2002)

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data
por: Sbisà, Elisabetta, et al.
Publicado: (2007)

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments
por: Consiglio, Arianna, et al.
Publicado: (2012)

Integrated Analysis of microRNA and mRNA Expression Profiles: An Attempt to Disentangle the Complex Interaction Network in Attention Deficit Hyperactivity Disorder
por: Nuzziello, Nicoletta, et al.
Publicado: (2019)

WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes
por: Puccio, Simone, et al.
Publicado: (2017)

Analysis of Mammalian rDNA Internal Transcribed Spacers
por: Coleman, Annette W.
Publicado: (2013)

Regularized Least Squares Cancer Classifiers from DNA microarray data
por: Ancona, Nicola, et al.
Publicado: (2005)

Identification of the Fungal Community in Otomycosis by Internal Transcribed Spacer Sequencing
por: Gu, Xiaona, et al.
Publicado: (2022)

Extensive intragenomic variation in the internal transcribed spacer region of fungi
por: Bradshaw, Michael J., et al.
Publicado: (2023)

Comparison of Internal Transcribed Spacers and Intergenic Spacer Regions of Five Common Iranian Sheep Bursate Nematodes
por: NABAVI, Reza, et al.
Publicado: (2014)

Sequence Analysis of the Internal Transcribed Spacer of Ribosomal DNA in the Genus Rhizopus
por: Park, You-Jung, et al.
Publicado: (2005)

GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database
por: Pannarale, Paolo, et al.
Publicado: (2012)

New specific primers for amplification of the Internal Transcribed Spacer region in Clitellata (Annelida)
por: Liu, Yingkui, et al.
Publicado: (2017)

Functional regions in the 5′ external transcribed spacer of yeast pre-rRNA
por: Chen, Jing, et al.
Publicado: (2020)

The role of internal transcribed spacer 2 secondary structures in classifying mycoparasitic Ampelomyces
por: Prahl, Rosa E., et al.
Publicado: (2021)

RecountDB: a database of mapped and count corrected transcribed sequences
por: Wijaya, Edward, et al.
Publicado: (2012)

InteractomeSeq: a web server for the identification and profiling of domains and epitopes from phage display and next generation sequencing data
por: Puccio, Simone, et al.
Publicado: (2020)

Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on coxI DNA barcode
por: Balech, Bachir, et al.
Publicado: (2018)

Eukaryotic RNA Polymerases: The Many Ways to Transcribe a Gene
por: Barba-Aliaga, Marina, et al.
Publicado: (2021)

A fuzzy method for RNA-Seq differential expression analysis in presence of multireads
por: Consiglio, Arianna, et al.
Publicado: (2016)

DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
por: Robideau, Gregg P, et al.
Publicado: (2011)

Molecular Identification of Two Strains of Phellinus sp. by Internal Transcribed Spacer Sequence Analysis
por: Shin, Kwang-Soo
Publicado: (2011)

Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a Candidate Dinoflagellate Barcode Marker
por: Stern, Rowena F., et al.
Publicado: (2012)

Suitability of internal transcribed spacers (ITS) as markers for the population genetic structure of Blastocystis spp
por: Villalobos, Guiehdani, et al.
Publicado: (2014)

Endangered Uyghur Medicinal Plant Ferula Identification through the Second Internal Transcribed Spacer
por: Fan, Congzhao, et al.
Publicado: (2015)

Definition of Eight Mulberry Species in the Genus Morus by Internal Transcribed Spacer-Based Phylogeny
por: Zeng, Qiwei, et al.
Publicado: (2015)

ITScan: a web-based analysis tool for Internal Transcribed Spacer (ITS) sequences
por: Ferro, Milene, et al.
Publicado: (2014)

Internal transcribed spacer 2 barcode: a good tool for identifying Acanthopanacis cortex
por: Zhao, Sha, et al.
Publicado: (2015)

Assessing intragenomic variation of the internal transcribed spacer two: Adapting the Illumina metagenomics protocol
por: Alanagreh, Lo’ai, et al.
Publicado: (2017)

Metataxonomics of Internal Transcribed Spacer amplicons in cerebrospinal fluid for diagnosing and genotyping of cryptococcal meningitis
por: Zhu, Ji-Ting, et al.
Publicado: (2019)

A Comparative Study of 5S rDNA Non-Transcribed Spacers in Elaeagnaceae Species
por: Alexandrov, Oleg S., et al.
Publicado: (2020)

DNA Satellites Are Transcribed as Part of the Non-Coding Genome in Eukaryotes and Bacteria
por: Subirana, Juan A., et al.
Publicado: (2021)

Imidacloprid and Thiamethoxam Induced Mutations in Internal Transcribed Spacer 2 (ITS2) of Anopheles stephensi
por: Bhinder, Preety, et al.
Publicado: (2012)

Reliable differentiation of Meyerozyma guilliermondii from Meyerozyma caribbica by internal transcribed spacer restriction fingerprinting
por: Romi, Wahengbam, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_4d3v24ojtrld422gntk7gjhblm