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ClinVar: improving access to variant interpretations and supporting evidence

ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, public archive of human genetic variants and interpretations of their significance to disease, maintained at the National Institutes of Health. Interpretations of the clinical significance of variants are submitted by clinical te...

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Autores principales: Landrum, Melissa J, Lee, Jennifer M, Benson, Mark, Brown, Garth R, Chao, Chen, Chitipiralla, Shanmuga, Gu, Baoshan, Hart, Jennifer, Hoffman, Douglas, Jang, Wonhee, Karapetyan, Karen, Katz, Kenneth, Liu, Chunlei, Maddipatla, Zenith, Malheiro, Adriana, McDaniel, Kurt, Ovetsky, Michael, Riley, George, Zhou, George, Holmes, J Bradley, Kattman, Brandi L, Maglott, Donna R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753237/
https://www.ncbi.nlm.nih.gov/pubmed/29165669
http://dx.doi.org/10.1093/nar/gkx1153
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author Landrum, Melissa J
Lee, Jennifer M
Benson, Mark
Brown, Garth R
Chao, Chen
Chitipiralla, Shanmuga
Gu, Baoshan
Hart, Jennifer
Hoffman, Douglas
Jang, Wonhee
Karapetyan, Karen
Katz, Kenneth
Liu, Chunlei
Maddipatla, Zenith
Malheiro, Adriana
McDaniel, Kurt
Ovetsky, Michael
Riley, George
Zhou, George
Holmes, J Bradley
Kattman, Brandi L
Maglott, Donna R
author_facet Landrum, Melissa J
Lee, Jennifer M
Benson, Mark
Brown, Garth R
Chao, Chen
Chitipiralla, Shanmuga
Gu, Baoshan
Hart, Jennifer
Hoffman, Douglas
Jang, Wonhee
Karapetyan, Karen
Katz, Kenneth
Liu, Chunlei
Maddipatla, Zenith
Malheiro, Adriana
McDaniel, Kurt
Ovetsky, Michael
Riley, George
Zhou, George
Holmes, J Bradley
Kattman, Brandi L
Maglott, Donna R
author_sort Landrum, Melissa J
collection PubMed
description ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, public archive of human genetic variants and interpretations of their significance to disease, maintained at the National Institutes of Health. Interpretations of the clinical significance of variants are submitted by clinical testing laboratories, research laboratories, expert panels and other groups. ClinVar aggregates data by variant-disease pairs, and by variant (or set of variants). Data aggregated by variant are accessible on the website, in an improved set of variant call format files and as a new comprehensive XML report. ClinVar recently started accepting submissions that are focused primarily on providing phenotypic information for individuals who have had genetic testing. Submissions may come from clinical providers providing their own interpretation of the variant (‘provider interpretation’) or from groups such as patient registries that primarily provide phenotypic information from patients (‘phenotyping only’). ClinVar continues to make improvements to its search and retrieval functions. Several new fields are now indexed for more precise searching, and filters allow the user to narrow down a large set of search results.
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spelling pubmed-57532372018-01-05 ClinVar: improving access to variant interpretations and supporting evidence Landrum, Melissa J Lee, Jennifer M Benson, Mark Brown, Garth R Chao, Chen Chitipiralla, Shanmuga Gu, Baoshan Hart, Jennifer Hoffman, Douglas Jang, Wonhee Karapetyan, Karen Katz, Kenneth Liu, Chunlei Maddipatla, Zenith Malheiro, Adriana McDaniel, Kurt Ovetsky, Michael Riley, George Zhou, George Holmes, J Bradley Kattman, Brandi L Maglott, Donna R Nucleic Acids Res Database Issue ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, public archive of human genetic variants and interpretations of their significance to disease, maintained at the National Institutes of Health. Interpretations of the clinical significance of variants are submitted by clinical testing laboratories, research laboratories, expert panels and other groups. ClinVar aggregates data by variant-disease pairs, and by variant (or set of variants). Data aggregated by variant are accessible on the website, in an improved set of variant call format files and as a new comprehensive XML report. ClinVar recently started accepting submissions that are focused primarily on providing phenotypic information for individuals who have had genetic testing. Submissions may come from clinical providers providing their own interpretation of the variant (‘provider interpretation’) or from groups such as patient registries that primarily provide phenotypic information from patients (‘phenotyping only’). ClinVar continues to make improvements to its search and retrieval functions. Several new fields are now indexed for more precise searching, and filters allow the user to narrow down a large set of search results. Oxford University Press 2018-01-04 2017-11-20 /pmc/articles/PMC5753237/ /pubmed/29165669 http://dx.doi.org/10.1093/nar/gkx1153 Text en Published by Oxford University Press on behalf of Nucleic Acids Research 2017. This work is written by (a) US Government employee(s) and is in the public domain in the US.
spellingShingle Database Issue
Landrum, Melissa J
Lee, Jennifer M
Benson, Mark
Brown, Garth R
Chao, Chen
Chitipiralla, Shanmuga
Gu, Baoshan
Hart, Jennifer
Hoffman, Douglas
Jang, Wonhee
Karapetyan, Karen
Katz, Kenneth
Liu, Chunlei
Maddipatla, Zenith
Malheiro, Adriana
McDaniel, Kurt
Ovetsky, Michael
Riley, George
Zhou, George
Holmes, J Bradley
Kattman, Brandi L
Maglott, Donna R
ClinVar: improving access to variant interpretations and supporting evidence
title ClinVar: improving access to variant interpretations and supporting evidence
title_full ClinVar: improving access to variant interpretations and supporting evidence
title_fullStr ClinVar: improving access to variant interpretations and supporting evidence
title_full_unstemmed ClinVar: improving access to variant interpretations and supporting evidence
title_short ClinVar: improving access to variant interpretations and supporting evidence
title_sort clinvar: improving access to variant interpretations and supporting evidence
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753237/
https://www.ncbi.nlm.nih.gov/pubmed/29165669
http://dx.doi.org/10.1093/nar/gkx1153
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