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ClinVar: improving access to variant interpretations and supporting evidence
ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, public archive of human genetic variants and interpretations of their significance to disease, maintained at the National Institutes of Health. Interpretations of the clinical significance of variants are submitted by clinical te...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753237/ https://www.ncbi.nlm.nih.gov/pubmed/29165669 http://dx.doi.org/10.1093/nar/gkx1153 |
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author | Landrum, Melissa J Lee, Jennifer M Benson, Mark Brown, Garth R Chao, Chen Chitipiralla, Shanmuga Gu, Baoshan Hart, Jennifer Hoffman, Douglas Jang, Wonhee Karapetyan, Karen Katz, Kenneth Liu, Chunlei Maddipatla, Zenith Malheiro, Adriana McDaniel, Kurt Ovetsky, Michael Riley, George Zhou, George Holmes, J Bradley Kattman, Brandi L Maglott, Donna R |
author_facet | Landrum, Melissa J Lee, Jennifer M Benson, Mark Brown, Garth R Chao, Chen Chitipiralla, Shanmuga Gu, Baoshan Hart, Jennifer Hoffman, Douglas Jang, Wonhee Karapetyan, Karen Katz, Kenneth Liu, Chunlei Maddipatla, Zenith Malheiro, Adriana McDaniel, Kurt Ovetsky, Michael Riley, George Zhou, George Holmes, J Bradley Kattman, Brandi L Maglott, Donna R |
author_sort | Landrum, Melissa J |
collection | PubMed |
description | ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, public archive of human genetic variants and interpretations of their significance to disease, maintained at the National Institutes of Health. Interpretations of the clinical significance of variants are submitted by clinical testing laboratories, research laboratories, expert panels and other groups. ClinVar aggregates data by variant-disease pairs, and by variant (or set of variants). Data aggregated by variant are accessible on the website, in an improved set of variant call format files and as a new comprehensive XML report. ClinVar recently started accepting submissions that are focused primarily on providing phenotypic information for individuals who have had genetic testing. Submissions may come from clinical providers providing their own interpretation of the variant (‘provider interpretation’) or from groups such as patient registries that primarily provide phenotypic information from patients (‘phenotyping only’). ClinVar continues to make improvements to its search and retrieval functions. Several new fields are now indexed for more precise searching, and filters allow the user to narrow down a large set of search results. |
format | Online Article Text |
id | pubmed-5753237 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57532372018-01-05 ClinVar: improving access to variant interpretations and supporting evidence Landrum, Melissa J Lee, Jennifer M Benson, Mark Brown, Garth R Chao, Chen Chitipiralla, Shanmuga Gu, Baoshan Hart, Jennifer Hoffman, Douglas Jang, Wonhee Karapetyan, Karen Katz, Kenneth Liu, Chunlei Maddipatla, Zenith Malheiro, Adriana McDaniel, Kurt Ovetsky, Michael Riley, George Zhou, George Holmes, J Bradley Kattman, Brandi L Maglott, Donna R Nucleic Acids Res Database Issue ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, public archive of human genetic variants and interpretations of their significance to disease, maintained at the National Institutes of Health. Interpretations of the clinical significance of variants are submitted by clinical testing laboratories, research laboratories, expert panels and other groups. ClinVar aggregates data by variant-disease pairs, and by variant (or set of variants). Data aggregated by variant are accessible on the website, in an improved set of variant call format files and as a new comprehensive XML report. ClinVar recently started accepting submissions that are focused primarily on providing phenotypic information for individuals who have had genetic testing. Submissions may come from clinical providers providing their own interpretation of the variant (‘provider interpretation’) or from groups such as patient registries that primarily provide phenotypic information from patients (‘phenotyping only’). ClinVar continues to make improvements to its search and retrieval functions. Several new fields are now indexed for more precise searching, and filters allow the user to narrow down a large set of search results. Oxford University Press 2018-01-04 2017-11-20 /pmc/articles/PMC5753237/ /pubmed/29165669 http://dx.doi.org/10.1093/nar/gkx1153 Text en Published by Oxford University Press on behalf of Nucleic Acids Research 2017. This work is written by (a) US Government employee(s) and is in the public domain in the US. |
spellingShingle | Database Issue Landrum, Melissa J Lee, Jennifer M Benson, Mark Brown, Garth R Chao, Chen Chitipiralla, Shanmuga Gu, Baoshan Hart, Jennifer Hoffman, Douglas Jang, Wonhee Karapetyan, Karen Katz, Kenneth Liu, Chunlei Maddipatla, Zenith Malheiro, Adriana McDaniel, Kurt Ovetsky, Michael Riley, George Zhou, George Holmes, J Bradley Kattman, Brandi L Maglott, Donna R ClinVar: improving access to variant interpretations and supporting evidence |
title | ClinVar: improving access to variant interpretations and supporting evidence |
title_full | ClinVar: improving access to variant interpretations and supporting evidence |
title_fullStr | ClinVar: improving access to variant interpretations and supporting evidence |
title_full_unstemmed | ClinVar: improving access to variant interpretations and supporting evidence |
title_short | ClinVar: improving access to variant interpretations and supporting evidence |
title_sort | clinvar: improving access to variant interpretations and supporting evidence |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753237/ https://www.ncbi.nlm.nih.gov/pubmed/29165669 http://dx.doi.org/10.1093/nar/gkx1153 |
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