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DNA Data Bank of Japan: 30th anniversary

The DNA Data Bank of Japan (DDBJ) Center (http://www.ddbj.nig.ac.jp) has been providing public data services for 30 years since 1987. We are collecting nucleotide sequence data and associated biological information from researchers as a member of the International Nucleotide Sequence Database Collab...

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Autores principales: Kodama, Yuichi, Mashima, Jun, Kosuge, Takehide, Kaminuma, Eli, Ogasawara, Osamu, Okubo, Kousaku, Nakamura, Yasukazu, Takagi, Toshihisa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753283/
https://www.ncbi.nlm.nih.gov/pubmed/29040613
http://dx.doi.org/10.1093/nar/gkx926
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author Kodama, Yuichi
Mashima, Jun
Kosuge, Takehide
Kaminuma, Eli
Ogasawara, Osamu
Okubo, Kousaku
Nakamura, Yasukazu
Takagi, Toshihisa
author_facet Kodama, Yuichi
Mashima, Jun
Kosuge, Takehide
Kaminuma, Eli
Ogasawara, Osamu
Okubo, Kousaku
Nakamura, Yasukazu
Takagi, Toshihisa
author_sort Kodama, Yuichi
collection PubMed
description The DNA Data Bank of Japan (DDBJ) Center (http://www.ddbj.nig.ac.jp) has been providing public data services for 30 years since 1987. We are collecting nucleotide sequence data and associated biological information from researchers as a member of the International Nucleotide Sequence Database Collaboration (INSDC), in collaboration with the US National Center for Biotechnology Information and the European Bioinformatics Institute. The DDBJ Center also services the Japanese Genotype-phenotype Archive (JGA) with the National Bioscience Database Center to collect genotype and phenotype data of human individuals. Here, we outline our database activities for INSDC and JGA over the past year, and introduce submission, retrieval and analysis services running on our supercomputer system and their recent developments. Furthermore, we highlight our responses to the amended Japanese rules for the protection of personal information and the launch of the DDBJ Group Cloud service for sharing pre-publication data among research groups.
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spelling pubmed-57532832018-01-05 DNA Data Bank of Japan: 30th anniversary Kodama, Yuichi Mashima, Jun Kosuge, Takehide Kaminuma, Eli Ogasawara, Osamu Okubo, Kousaku Nakamura, Yasukazu Takagi, Toshihisa Nucleic Acids Res Database Issue The DNA Data Bank of Japan (DDBJ) Center (http://www.ddbj.nig.ac.jp) has been providing public data services for 30 years since 1987. We are collecting nucleotide sequence data and associated biological information from researchers as a member of the International Nucleotide Sequence Database Collaboration (INSDC), in collaboration with the US National Center for Biotechnology Information and the European Bioinformatics Institute. The DDBJ Center also services the Japanese Genotype-phenotype Archive (JGA) with the National Bioscience Database Center to collect genotype and phenotype data of human individuals. Here, we outline our database activities for INSDC and JGA over the past year, and introduce submission, retrieval and analysis services running on our supercomputer system and their recent developments. Furthermore, we highlight our responses to the amended Japanese rules for the protection of personal information and the launch of the DDBJ Group Cloud service for sharing pre-publication data among research groups. Oxford University Press 2018-01-04 2017-10-10 /pmc/articles/PMC5753283/ /pubmed/29040613 http://dx.doi.org/10.1093/nar/gkx926 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Kodama, Yuichi
Mashima, Jun
Kosuge, Takehide
Kaminuma, Eli
Ogasawara, Osamu
Okubo, Kousaku
Nakamura, Yasukazu
Takagi, Toshihisa
DNA Data Bank of Japan: 30th anniversary
title DNA Data Bank of Japan: 30th anniversary
title_full DNA Data Bank of Japan: 30th anniversary
title_fullStr DNA Data Bank of Japan: 30th anniversary
title_full_unstemmed DNA Data Bank of Japan: 30th anniversary
title_short DNA Data Bank of Japan: 30th anniversary
title_sort dna data bank of japan: 30th anniversary
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753283/
https://www.ncbi.nlm.nih.gov/pubmed/29040613
http://dx.doi.org/10.1093/nar/gkx926
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