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jMorp: Japanese Multi Omics Reference Panel

We developed jMorp, a new database containing metabolome and proteome data for plasma obtained from >5000 healthy Japanese volunteers from the Tohoku Medical Megabank Cohort Study, which is available at https://jmorp.megabank.tohoku.ac.jp. Metabolome data were measured by proton nuclear magnetic...

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Autores principales: Tadaka, Shu, Saigusa, Daisuke, Motoike, Ikuko N, Inoue, Jin, Aoki, Yuichi, Shirota, Matsuyuki, Koshiba, Seizo, Yamamoto, Masayuki, Kinoshita, Kengo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753289/
https://www.ncbi.nlm.nih.gov/pubmed/29069501
http://dx.doi.org/10.1093/nar/gkx978
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author Tadaka, Shu
Saigusa, Daisuke
Motoike, Ikuko N
Inoue, Jin
Aoki, Yuichi
Shirota, Matsuyuki
Koshiba, Seizo
Yamamoto, Masayuki
Kinoshita, Kengo
author_facet Tadaka, Shu
Saigusa, Daisuke
Motoike, Ikuko N
Inoue, Jin
Aoki, Yuichi
Shirota, Matsuyuki
Koshiba, Seizo
Yamamoto, Masayuki
Kinoshita, Kengo
author_sort Tadaka, Shu
collection PubMed
description We developed jMorp, a new database containing metabolome and proteome data for plasma obtained from >5000 healthy Japanese volunteers from the Tohoku Medical Megabank Cohort Study, which is available at https://jmorp.megabank.tohoku.ac.jp. Metabolome data were measured by proton nuclear magnetic resonance (NMR) and liquid chromatography–mass spectrometry (LC–MS), while proteome data were obtained by nanoLC–MS. We released the concentration distributions of 37 metabolites identified by NMR, distributions of peak intensities of 257 characterized metabolites by LC–MS, and observed frequencies of 256 abundant proteins. Additionally, correlation networks for the metabolites can be observed using an interactive network viewer. Compared with some existing databases, jMorp has some unique features: (i) Metabolome data were obtained using a single protocol in a single institute, ensuring that measurement biases were significantly minimized; (ii) The database contains large-scale data for healthy volunteers with various health records and genome data and (iii) Correlations between metabolites can be easily observed using the graphical viewer. Metabolites data are becoming important intermediate markers for evaluating the health states of humans, and thus jMorp is an outstanding resource for a wide range of researchers, particularly those in the fields of medical science, applied molecular biology, and biochemistry.
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spelling pubmed-57532892018-01-05 jMorp: Japanese Multi Omics Reference Panel Tadaka, Shu Saigusa, Daisuke Motoike, Ikuko N Inoue, Jin Aoki, Yuichi Shirota, Matsuyuki Koshiba, Seizo Yamamoto, Masayuki Kinoshita, Kengo Nucleic Acids Res Database Issue We developed jMorp, a new database containing metabolome and proteome data for plasma obtained from >5000 healthy Japanese volunteers from the Tohoku Medical Megabank Cohort Study, which is available at https://jmorp.megabank.tohoku.ac.jp. Metabolome data were measured by proton nuclear magnetic resonance (NMR) and liquid chromatography–mass spectrometry (LC–MS), while proteome data were obtained by nanoLC–MS. We released the concentration distributions of 37 metabolites identified by NMR, distributions of peak intensities of 257 characterized metabolites by LC–MS, and observed frequencies of 256 abundant proteins. Additionally, correlation networks for the metabolites can be observed using an interactive network viewer. Compared with some existing databases, jMorp has some unique features: (i) Metabolome data were obtained using a single protocol in a single institute, ensuring that measurement biases were significantly minimized; (ii) The database contains large-scale data for healthy volunteers with various health records and genome data and (iii) Correlations between metabolites can be easily observed using the graphical viewer. Metabolites data are becoming important intermediate markers for evaluating the health states of humans, and thus jMorp is an outstanding resource for a wide range of researchers, particularly those in the fields of medical science, applied molecular biology, and biochemistry. Oxford University Press 2018-01-04 2017-10-24 /pmc/articles/PMC5753289/ /pubmed/29069501 http://dx.doi.org/10.1093/nar/gkx978 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Tadaka, Shu
Saigusa, Daisuke
Motoike, Ikuko N
Inoue, Jin
Aoki, Yuichi
Shirota, Matsuyuki
Koshiba, Seizo
Yamamoto, Masayuki
Kinoshita, Kengo
jMorp: Japanese Multi Omics Reference Panel
title jMorp: Japanese Multi Omics Reference Panel
title_full jMorp: Japanese Multi Omics Reference Panel
title_fullStr jMorp: Japanese Multi Omics Reference Panel
title_full_unstemmed jMorp: Japanese Multi Omics Reference Panel
title_short jMorp: Japanese Multi Omics Reference Panel
title_sort jmorp: japanese multi omics reference panel
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753289/
https://www.ncbi.nlm.nih.gov/pubmed/29069501
http://dx.doi.org/10.1093/nar/gkx978
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