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mVOC 2.0: a database of microbial volatiles

Metabolic capabilities of microorganisms include the production of secondary metabolites (e.g. antibiotics). The analysis of microbial volatile organic compounds (mVOCs) is an emerging research field with huge impact on medical, agricultural and biotechnical applied and basic science. The mVOC datab...

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Autores principales: Lemfack, Marie C, Gohlke, Bjoern-Oliver, Toguem, Serge M T, Preissner, Saskia, Piechulla, Birgit, Preissner, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753297/
https://www.ncbi.nlm.nih.gov/pubmed/29106611
http://dx.doi.org/10.1093/nar/gkx1016
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author Lemfack, Marie C
Gohlke, Bjoern-Oliver
Toguem, Serge M T
Preissner, Saskia
Piechulla, Birgit
Preissner, Robert
author_facet Lemfack, Marie C
Gohlke, Bjoern-Oliver
Toguem, Serge M T
Preissner, Saskia
Piechulla, Birgit
Preissner, Robert
author_sort Lemfack, Marie C
collection PubMed
description Metabolic capabilities of microorganisms include the production of secondary metabolites (e.g. antibiotics). The analysis of microbial volatile organic compounds (mVOCs) is an emerging research field with huge impact on medical, agricultural and biotechnical applied and basic science. The mVOC database (v1) has grown with microbiome research and integrated species information with data on emitted volatiles. Here, we present the mVOC 2.0 database with about 2000 compounds from almost 1000 species and new features to work with the database. The extended collection of compounds was augmented with data regarding mVOC-mediated effects on plants, fungi, bacteria and (in-)vertebrates. The mVOC database 2.0 now features a mass spectrum finder, which allows a quick mass spectrum comparison for compound identification and the generation of species-specific VOC signatures. Automatic updates, useful links and search for mVOC literature are also included. The mVOC database aggregates and refines available information regarding microbial volatiles, with the ultimate aim to provide a comprehensive and informative platform for scientists working in this research field. To address this need, we maintain a publicly available mVOC database at: http://bioinformatics.charite.de/mvoc.
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spelling pubmed-57532972018-01-05 mVOC 2.0: a database of microbial volatiles Lemfack, Marie C Gohlke, Bjoern-Oliver Toguem, Serge M T Preissner, Saskia Piechulla, Birgit Preissner, Robert Nucleic Acids Res Database Issue Metabolic capabilities of microorganisms include the production of secondary metabolites (e.g. antibiotics). The analysis of microbial volatile organic compounds (mVOCs) is an emerging research field with huge impact on medical, agricultural and biotechnical applied and basic science. The mVOC database (v1) has grown with microbiome research and integrated species information with data on emitted volatiles. Here, we present the mVOC 2.0 database with about 2000 compounds from almost 1000 species and new features to work with the database. The extended collection of compounds was augmented with data regarding mVOC-mediated effects on plants, fungi, bacteria and (in-)vertebrates. The mVOC database 2.0 now features a mass spectrum finder, which allows a quick mass spectrum comparison for compound identification and the generation of species-specific VOC signatures. Automatic updates, useful links and search for mVOC literature are also included. The mVOC database aggregates and refines available information regarding microbial volatiles, with the ultimate aim to provide a comprehensive and informative platform for scientists working in this research field. To address this need, we maintain a publicly available mVOC database at: http://bioinformatics.charite.de/mvoc. Oxford University Press 2018-01-04 2017-11-02 /pmc/articles/PMC5753297/ /pubmed/29106611 http://dx.doi.org/10.1093/nar/gkx1016 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Lemfack, Marie C
Gohlke, Bjoern-Oliver
Toguem, Serge M T
Preissner, Saskia
Piechulla, Birgit
Preissner, Robert
mVOC 2.0: a database of microbial volatiles
title mVOC 2.0: a database of microbial volatiles
title_full mVOC 2.0: a database of microbial volatiles
title_fullStr mVOC 2.0: a database of microbial volatiles
title_full_unstemmed mVOC 2.0: a database of microbial volatiles
title_short mVOC 2.0: a database of microbial volatiles
title_sort mvoc 2.0: a database of microbial volatiles
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753297/
https://www.ncbi.nlm.nih.gov/pubmed/29106611
http://dx.doi.org/10.1093/nar/gkx1016
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