Cargando…
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
The MobiDB (URL: mobidb.bio.unipd.it) database of protein disorder and mobility annotations has been significantly updated and upgraded since its last major renewal in 2014. Several curated datasets for intrinsic disorder and folding upon binding have been integrated from specialized databases. The...
Autores principales: | , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753340/ https://www.ncbi.nlm.nih.gov/pubmed/29136219 http://dx.doi.org/10.1093/nar/gkx1071 |
_version_ | 1783290254167375872 |
---|---|
author | Piovesan, Damiano Tabaro, Francesco Paladin, Lisanna Necci, Marco Mičetić, Ivan Camilloni, Carlo Davey, Norman Dosztányi, Zsuzsanna Mészáros, Bálint Monzon, Alexander M Parisi, Gustavo Schad, Eva Sormanni, Pietro Tompa, Peter Vendruscolo, Michele Vranken, Wim F Tosatto, Silvio C E |
author_facet | Piovesan, Damiano Tabaro, Francesco Paladin, Lisanna Necci, Marco Mičetić, Ivan Camilloni, Carlo Davey, Norman Dosztányi, Zsuzsanna Mészáros, Bálint Monzon, Alexander M Parisi, Gustavo Schad, Eva Sormanni, Pietro Tompa, Peter Vendruscolo, Michele Vranken, Wim F Tosatto, Silvio C E |
author_sort | Piovesan, Damiano |
collection | PubMed |
description | The MobiDB (URL: mobidb.bio.unipd.it) database of protein disorder and mobility annotations has been significantly updated and upgraded since its last major renewal in 2014. Several curated datasets for intrinsic disorder and folding upon binding have been integrated from specialized databases. The indirect evidence has also been expanded to better capture information available in the PDB, such as high temperature residues in X-ray structures and overall conformational diversity. Novel nuclear magnetic resonance chemical shift data provides an additional experimental information layer on conformational dynamics. Predictions have been expanded to provide new types of annotation on backbone rigidity, secondary structure preference and disordered binding regions. MobiDB 3.0 contains information for the complete UniProt protein set and synchronization has been improved by covering all UniParc sequences. An advanced search function allows the creation of a wide array of custom-made datasets for download and further analysis. A large amount of information and cross-links to more specialized databases are intended to make MobiDB the central resource for the scientific community working on protein intrinsic disorder and mobility. |
format | Online Article Text |
id | pubmed-5753340 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57533402018-01-05 MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins Piovesan, Damiano Tabaro, Francesco Paladin, Lisanna Necci, Marco Mičetić, Ivan Camilloni, Carlo Davey, Norman Dosztányi, Zsuzsanna Mészáros, Bálint Monzon, Alexander M Parisi, Gustavo Schad, Eva Sormanni, Pietro Tompa, Peter Vendruscolo, Michele Vranken, Wim F Tosatto, Silvio C E Nucleic Acids Res Database Issue The MobiDB (URL: mobidb.bio.unipd.it) database of protein disorder and mobility annotations has been significantly updated and upgraded since its last major renewal in 2014. Several curated datasets for intrinsic disorder and folding upon binding have been integrated from specialized databases. The indirect evidence has also been expanded to better capture information available in the PDB, such as high temperature residues in X-ray structures and overall conformational diversity. Novel nuclear magnetic resonance chemical shift data provides an additional experimental information layer on conformational dynamics. Predictions have been expanded to provide new types of annotation on backbone rigidity, secondary structure preference and disordered binding regions. MobiDB 3.0 contains information for the complete UniProt protein set and synchronization has been improved by covering all UniParc sequences. An advanced search function allows the creation of a wide array of custom-made datasets for download and further analysis. A large amount of information and cross-links to more specialized databases are intended to make MobiDB the central resource for the scientific community working on protein intrinsic disorder and mobility. Oxford University Press 2018-01-04 2017-11-10 /pmc/articles/PMC5753340/ /pubmed/29136219 http://dx.doi.org/10.1093/nar/gkx1071 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Piovesan, Damiano Tabaro, Francesco Paladin, Lisanna Necci, Marco Mičetić, Ivan Camilloni, Carlo Davey, Norman Dosztányi, Zsuzsanna Mészáros, Bálint Monzon, Alexander M Parisi, Gustavo Schad, Eva Sormanni, Pietro Tompa, Peter Vendruscolo, Michele Vranken, Wim F Tosatto, Silvio C E MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins |
title | MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins |
title_full | MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins |
title_fullStr | MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins |
title_full_unstemmed | MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins |
title_short | MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins |
title_sort | mobidb 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753340/ https://www.ncbi.nlm.nih.gov/pubmed/29136219 http://dx.doi.org/10.1093/nar/gkx1071 |
work_keys_str_mv | AT piovesandamiano mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT tabarofrancesco mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT paladinlisanna mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT neccimarco mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT miceticivan mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT camillonicarlo mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT daveynorman mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT dosztanyizsuzsanna mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT meszarosbalint mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT monzonalexanderm mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT parisigustavo mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT schadeva mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT sormannipietro mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT tompapeter mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT vendruscolomichele mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT vrankenwimf mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins AT tosattosilvioce mobidb30moreannotationsforintrinsicdisorderconformationaldiversityandinteractionsinproteins |