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MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins

The MobiDB (URL: mobidb.bio.unipd.it) database of protein disorder and mobility annotations has been significantly updated and upgraded since its last major renewal in 2014. Several curated datasets for intrinsic disorder and folding upon binding have been integrated from specialized databases. The...

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Autores principales: Piovesan, Damiano, Tabaro, Francesco, Paladin, Lisanna, Necci, Marco, Mičetić, Ivan, Camilloni, Carlo, Davey, Norman, Dosztányi, Zsuzsanna, Mészáros, Bálint, Monzon, Alexander M, Parisi, Gustavo, Schad, Eva, Sormanni, Pietro, Tompa, Peter, Vendruscolo, Michele, Vranken, Wim F, Tosatto, Silvio C E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753340/
https://www.ncbi.nlm.nih.gov/pubmed/29136219
http://dx.doi.org/10.1093/nar/gkx1071
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author Piovesan, Damiano
Tabaro, Francesco
Paladin, Lisanna
Necci, Marco
Mičetić, Ivan
Camilloni, Carlo
Davey, Norman
Dosztányi, Zsuzsanna
Mészáros, Bálint
Monzon, Alexander M
Parisi, Gustavo
Schad, Eva
Sormanni, Pietro
Tompa, Peter
Vendruscolo, Michele
Vranken, Wim F
Tosatto, Silvio C E
author_facet Piovesan, Damiano
Tabaro, Francesco
Paladin, Lisanna
Necci, Marco
Mičetić, Ivan
Camilloni, Carlo
Davey, Norman
Dosztányi, Zsuzsanna
Mészáros, Bálint
Monzon, Alexander M
Parisi, Gustavo
Schad, Eva
Sormanni, Pietro
Tompa, Peter
Vendruscolo, Michele
Vranken, Wim F
Tosatto, Silvio C E
author_sort Piovesan, Damiano
collection PubMed
description The MobiDB (URL: mobidb.bio.unipd.it) database of protein disorder and mobility annotations has been significantly updated and upgraded since its last major renewal in 2014. Several curated datasets for intrinsic disorder and folding upon binding have been integrated from specialized databases. The indirect evidence has also been expanded to better capture information available in the PDB, such as high temperature residues in X-ray structures and overall conformational diversity. Novel nuclear magnetic resonance chemical shift data provides an additional experimental information layer on conformational dynamics. Predictions have been expanded to provide new types of annotation on backbone rigidity, secondary structure preference and disordered binding regions. MobiDB 3.0 contains information for the complete UniProt protein set and synchronization has been improved by covering all UniParc sequences. An advanced search function allows the creation of a wide array of custom-made datasets for download and further analysis. A large amount of information and cross-links to more specialized databases are intended to make MobiDB the central resource for the scientific community working on protein intrinsic disorder and mobility.
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spelling pubmed-57533402018-01-05 MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins Piovesan, Damiano Tabaro, Francesco Paladin, Lisanna Necci, Marco Mičetić, Ivan Camilloni, Carlo Davey, Norman Dosztányi, Zsuzsanna Mészáros, Bálint Monzon, Alexander M Parisi, Gustavo Schad, Eva Sormanni, Pietro Tompa, Peter Vendruscolo, Michele Vranken, Wim F Tosatto, Silvio C E Nucleic Acids Res Database Issue The MobiDB (URL: mobidb.bio.unipd.it) database of protein disorder and mobility annotations has been significantly updated and upgraded since its last major renewal in 2014. Several curated datasets for intrinsic disorder and folding upon binding have been integrated from specialized databases. The indirect evidence has also been expanded to better capture information available in the PDB, such as high temperature residues in X-ray structures and overall conformational diversity. Novel nuclear magnetic resonance chemical shift data provides an additional experimental information layer on conformational dynamics. Predictions have been expanded to provide new types of annotation on backbone rigidity, secondary structure preference and disordered binding regions. MobiDB 3.0 contains information for the complete UniProt protein set and synchronization has been improved by covering all UniParc sequences. An advanced search function allows the creation of a wide array of custom-made datasets for download and further analysis. A large amount of information and cross-links to more specialized databases are intended to make MobiDB the central resource for the scientific community working on protein intrinsic disorder and mobility. Oxford University Press 2018-01-04 2017-11-10 /pmc/articles/PMC5753340/ /pubmed/29136219 http://dx.doi.org/10.1093/nar/gkx1071 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Piovesan, Damiano
Tabaro, Francesco
Paladin, Lisanna
Necci, Marco
Mičetić, Ivan
Camilloni, Carlo
Davey, Norman
Dosztányi, Zsuzsanna
Mészáros, Bálint
Monzon, Alexander M
Parisi, Gustavo
Schad, Eva
Sormanni, Pietro
Tompa, Peter
Vendruscolo, Michele
Vranken, Wim F
Tosatto, Silvio C E
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
title MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
title_full MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
title_fullStr MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
title_full_unstemmed MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
title_short MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
title_sort mobidb 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753340/
https://www.ncbi.nlm.nih.gov/pubmed/29136219
http://dx.doi.org/10.1093/nar/gkx1071
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