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20 years of the SMART protein domain annotation resource
SMART (Simple Modular Architecture Research Tool) is a web resource (http://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 8 contains manually curated models for more than 1300 protein domains, with approximatel...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753352/ https://www.ncbi.nlm.nih.gov/pubmed/29040681 http://dx.doi.org/10.1093/nar/gkx922 |
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author | Letunic, Ivica Bork, Peer |
author_facet | Letunic, Ivica Bork, Peer |
author_sort | Letunic, Ivica |
collection | PubMed |
description | SMART (Simple Modular Architecture Research Tool) is a web resource (http://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 8 contains manually curated models for more than 1300 protein domains, with approximately 100 new models added since our last update article (1). The underlying protein databases were synchronized with UniProt (2), Ensembl (3) and STRING (4), doubling the total number of annotated domains and other protein features to more than 200 million. In its 20th year, the SMART analysis results pages have been streamlined again and its information sources have been updated. SMART’s vector based display engine has been extended to all protein schematics in SMART and rewritten to use the latest web technologies. The internal full text search engine has been redesigned and updated, resulting in greatly increased search speed. |
format | Online Article Text |
id | pubmed-5753352 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57533522018-01-05 20 years of the SMART protein domain annotation resource Letunic, Ivica Bork, Peer Nucleic Acids Res Database Issue SMART (Simple Modular Architecture Research Tool) is a web resource (http://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 8 contains manually curated models for more than 1300 protein domains, with approximately 100 new models added since our last update article (1). The underlying protein databases were synchronized with UniProt (2), Ensembl (3) and STRING (4), doubling the total number of annotated domains and other protein features to more than 200 million. In its 20th year, the SMART analysis results pages have been streamlined again and its information sources have been updated. SMART’s vector based display engine has been extended to all protein schematics in SMART and rewritten to use the latest web technologies. The internal full text search engine has been redesigned and updated, resulting in greatly increased search speed. Oxford University Press 2018-01-04 2017-10-10 /pmc/articles/PMC5753352/ /pubmed/29040681 http://dx.doi.org/10.1093/nar/gkx922 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Letunic, Ivica Bork, Peer 20 years of the SMART protein domain annotation resource |
title | 20 years of the SMART protein domain annotation resource |
title_full | 20 years of the SMART protein domain annotation resource |
title_fullStr | 20 years of the SMART protein domain annotation resource |
title_full_unstemmed | 20 years of the SMART protein domain annotation resource |
title_short | 20 years of the SMART protein domain annotation resource |
title_sort | 20 years of the smart protein domain annotation resource |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753352/ https://www.ncbi.nlm.nih.gov/pubmed/29040681 http://dx.doi.org/10.1093/nar/gkx922 |
work_keys_str_mv | AT letunicivica 20yearsofthesmartproteindomainannotationresource AT borkpeer 20yearsofthesmartproteindomainannotationresource |