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20 years of the SMART protein domain annotation resource

SMART (Simple Modular Architecture Research Tool) is a web resource (http://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 8 contains manually curated models for more than 1300 protein domains, with approximatel...

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Detalles Bibliográficos
Autores principales: Letunic, Ivica, Bork, Peer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753352/
https://www.ncbi.nlm.nih.gov/pubmed/29040681
http://dx.doi.org/10.1093/nar/gkx922
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author Letunic, Ivica
Bork, Peer
author_facet Letunic, Ivica
Bork, Peer
author_sort Letunic, Ivica
collection PubMed
description SMART (Simple Modular Architecture Research Tool) is a web resource (http://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 8 contains manually curated models for more than 1300 protein domains, with approximately 100 new models added since our last update article (1). The underlying protein databases were synchronized with UniProt (2), Ensembl (3) and STRING (4), doubling the total number of annotated domains and other protein features to more than 200 million. In its 20th year, the SMART analysis results pages have been streamlined again and its information sources have been updated. SMART’s vector based display engine has been extended to all protein schematics in SMART and rewritten to use the latest web technologies. The internal full text search engine has been redesigned and updated, resulting in greatly increased search speed.
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spelling pubmed-57533522018-01-05 20 years of the SMART protein domain annotation resource Letunic, Ivica Bork, Peer Nucleic Acids Res Database Issue SMART (Simple Modular Architecture Research Tool) is a web resource (http://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 8 contains manually curated models for more than 1300 protein domains, with approximately 100 new models added since our last update article (1). The underlying protein databases were synchronized with UniProt (2), Ensembl (3) and STRING (4), doubling the total number of annotated domains and other protein features to more than 200 million. In its 20th year, the SMART analysis results pages have been streamlined again and its information sources have been updated. SMART’s vector based display engine has been extended to all protein schematics in SMART and rewritten to use the latest web technologies. The internal full text search engine has been redesigned and updated, resulting in greatly increased search speed. Oxford University Press 2018-01-04 2017-10-10 /pmc/articles/PMC5753352/ /pubmed/29040681 http://dx.doi.org/10.1093/nar/gkx922 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Letunic, Ivica
Bork, Peer
20 years of the SMART protein domain annotation resource
title 20 years of the SMART protein domain annotation resource
title_full 20 years of the SMART protein domain annotation resource
title_fullStr 20 years of the SMART protein domain annotation resource
title_full_unstemmed 20 years of the SMART protein domain annotation resource
title_short 20 years of the SMART protein domain annotation resource
title_sort 20 years of the smart protein domain annotation resource
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753352/
https://www.ncbi.nlm.nih.gov/pubmed/29040681
http://dx.doi.org/10.1093/nar/gkx922
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