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The UCSC Genome Browser database: 2018 update
The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/C...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753355/ https://www.ncbi.nlm.nih.gov/pubmed/29106570 http://dx.doi.org/10.1093/nar/gkx1020 |
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author | Casper, Jonathan Zweig, Ann S Villarreal, Chris Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Karolchik, Donna Hinrichs, Angie S Haeussler, Maximilian Guruvadoo, Luvina Navarro Gonzalez, Jairo Gibson, David Fiddes, Ian T Eisenhart, Christopher Diekhans, Mark Clawson, Hiram Barber, Galt P Armstrong, Joel Haussler, David Kuhn, Robert M Kent, W James |
author_facet | Casper, Jonathan Zweig, Ann S Villarreal, Chris Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Karolchik, Donna Hinrichs, Angie S Haeussler, Maximilian Guruvadoo, Luvina Navarro Gonzalez, Jairo Gibson, David Fiddes, Ian T Eisenhart, Christopher Diekhans, Mark Clawson, Hiram Barber, Galt P Armstrong, Joel Haussler, David Kuhn, Robert M Kent, W James |
author_sort | Casper, Jonathan |
collection | PubMed |
description | The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors. |
format | Online Article Text |
id | pubmed-5753355 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57533552018-01-05 The UCSC Genome Browser database: 2018 update Casper, Jonathan Zweig, Ann S Villarreal, Chris Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Karolchik, Donna Hinrichs, Angie S Haeussler, Maximilian Guruvadoo, Luvina Navarro Gonzalez, Jairo Gibson, David Fiddes, Ian T Eisenhart, Christopher Diekhans, Mark Clawson, Hiram Barber, Galt P Armstrong, Joel Haussler, David Kuhn, Robert M Kent, W James Nucleic Acids Res Database Issue The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors. Oxford University Press 2018-01-04 2017-11-02 /pmc/articles/PMC5753355/ /pubmed/29106570 http://dx.doi.org/10.1093/nar/gkx1020 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Casper, Jonathan Zweig, Ann S Villarreal, Chris Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Karolchik, Donna Hinrichs, Angie S Haeussler, Maximilian Guruvadoo, Luvina Navarro Gonzalez, Jairo Gibson, David Fiddes, Ian T Eisenhart, Christopher Diekhans, Mark Clawson, Hiram Barber, Galt P Armstrong, Joel Haussler, David Kuhn, Robert M Kent, W James The UCSC Genome Browser database: 2018 update |
title | The UCSC Genome Browser database: 2018 update |
title_full | The UCSC Genome Browser database: 2018 update |
title_fullStr | The UCSC Genome Browser database: 2018 update |
title_full_unstemmed | The UCSC Genome Browser database: 2018 update |
title_short | The UCSC Genome Browser database: 2018 update |
title_sort | ucsc genome browser database: 2018 update |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753355/ https://www.ncbi.nlm.nih.gov/pubmed/29106570 http://dx.doi.org/10.1093/nar/gkx1020 |
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