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The UCSC Genome Browser database: 2018 update

The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/C...

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Autores principales: Casper, Jonathan, Zweig, Ann S, Villarreal, Chris, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Karolchik, Donna, Hinrichs, Angie S, Haeussler, Maximilian, Guruvadoo, Luvina, Navarro Gonzalez, Jairo, Gibson, David, Fiddes, Ian T, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Barber, Galt P, Armstrong, Joel, Haussler, David, Kuhn, Robert M, Kent, W James
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753355/
https://www.ncbi.nlm.nih.gov/pubmed/29106570
http://dx.doi.org/10.1093/nar/gkx1020
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author Casper, Jonathan
Zweig, Ann S
Villarreal, Chris
Tyner, Cath
Speir, Matthew L
Rosenbloom, Kate R
Raney, Brian J
Lee, Christopher M
Lee, Brian T
Karolchik, Donna
Hinrichs, Angie S
Haeussler, Maximilian
Guruvadoo, Luvina
Navarro Gonzalez, Jairo
Gibson, David
Fiddes, Ian T
Eisenhart, Christopher
Diekhans, Mark
Clawson, Hiram
Barber, Galt P
Armstrong, Joel
Haussler, David
Kuhn, Robert M
Kent, W James
author_facet Casper, Jonathan
Zweig, Ann S
Villarreal, Chris
Tyner, Cath
Speir, Matthew L
Rosenbloom, Kate R
Raney, Brian J
Lee, Christopher M
Lee, Brian T
Karolchik, Donna
Hinrichs, Angie S
Haeussler, Maximilian
Guruvadoo, Luvina
Navarro Gonzalez, Jairo
Gibson, David
Fiddes, Ian T
Eisenhart, Christopher
Diekhans, Mark
Clawson, Hiram
Barber, Galt P
Armstrong, Joel
Haussler, David
Kuhn, Robert M
Kent, W James
author_sort Casper, Jonathan
collection PubMed
description The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors.
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spelling pubmed-57533552018-01-05 The UCSC Genome Browser database: 2018 update Casper, Jonathan Zweig, Ann S Villarreal, Chris Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Karolchik, Donna Hinrichs, Angie S Haeussler, Maximilian Guruvadoo, Luvina Navarro Gonzalez, Jairo Gibson, David Fiddes, Ian T Eisenhart, Christopher Diekhans, Mark Clawson, Hiram Barber, Galt P Armstrong, Joel Haussler, David Kuhn, Robert M Kent, W James Nucleic Acids Res Database Issue The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors. Oxford University Press 2018-01-04 2017-11-02 /pmc/articles/PMC5753355/ /pubmed/29106570 http://dx.doi.org/10.1093/nar/gkx1020 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Casper, Jonathan
Zweig, Ann S
Villarreal, Chris
Tyner, Cath
Speir, Matthew L
Rosenbloom, Kate R
Raney, Brian J
Lee, Christopher M
Lee, Brian T
Karolchik, Donna
Hinrichs, Angie S
Haeussler, Maximilian
Guruvadoo, Luvina
Navarro Gonzalez, Jairo
Gibson, David
Fiddes, Ian T
Eisenhart, Christopher
Diekhans, Mark
Clawson, Hiram
Barber, Galt P
Armstrong, Joel
Haussler, David
Kuhn, Robert M
Kent, W James
The UCSC Genome Browser database: 2018 update
title The UCSC Genome Browser database: 2018 update
title_full The UCSC Genome Browser database: 2018 update
title_fullStr The UCSC Genome Browser database: 2018 update
title_full_unstemmed The UCSC Genome Browser database: 2018 update
title_short The UCSC Genome Browser database: 2018 update
title_sort ucsc genome browser database: 2018 update
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753355/
https://www.ncbi.nlm.nih.gov/pubmed/29106570
http://dx.doi.org/10.1093/nar/gkx1020
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