Cargando…

Gene3D: Extensive prediction of globular domains in proteins

Mostrar otras versiones (1)

Gene3D (http://gene3d.biochem.ucl.ac.uk) is a database of globular domain annotations for millions of available protein sequences. Gene3D has previously featured in the Database issue of NAR and here we report a significant update to the Gene3D database. The current release, Gene3D v16, has signific...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lewis, Tony E, Sillitoe, Ian, Dawson, Natalie, Lam, Su Datt, Clarke, Tristan, Lee, David, Orengo, Christine, Lees, Jonathan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Database Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753370/ https://www.ncbi.nlm.nih.gov/pubmed/29112716 http://dx.doi.org/10.1093/nar/gkx1069

Ejemplares similares

Gene3D: Extensive prediction of globular domains in proteins
por: Lewis, Tony E, et al.
Publicado: (2018)

Gene3D: expanding the utility of domain assignments
por: Lam, Su Datt, et al.
Publicado: (2016)

CATH: an expanded resource to predict protein function through structure and sequence
por: Dawson, Natalie L., et al.
Publicado: (2017)

CATH: comprehensive structural and functional annotations for genome sequences
por: Sillitoe, Ian, et al.
Publicado: (2014)

CATH: expanding the horizons of structure-based functional annotations for genome sequences
por: Sillitoe, Ian, et al.
Publicado: (2019)

CATH: increased structural coverage of functional space
por: Sillitoe, Ian, et al.
Publicado: (2020)

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation
por: Sillitoe, Ian, et al.
Publicado: (2020)

Genome3D: exploiting structure to help users understand their sequences
por: Lewis, Tony E., et al.
Publicado: (2014)

FunTree: advances in a resource for exploring and contextualising protein function evolution
por: Sillitoe, Ian, et al.
Publicado: (2016)

CATH FunFHMMer web server: protein functional annotations using functional family assignments
por: Das, Sayoni, et al.
Publicado: (2015)

The InterPro protein families and domains database: 20 years on
por: Blum, Matthias, et al.
Publicado: (2020)

The history of the CATH structural classification of protein domains
por: Sillitoe, Ian, et al.
Publicado: (2015)

InterPro in 2017—beyond protein family and domain annotations
por: Finn, Robert D., et al.
Publicado: (2017)

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation
por: Das, Sayoni, et al.
Publicado: (2015)

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation
por: Das, Sayoni, et al.
Publicado: (2016)

An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences
por: Lam, Su Datt, et al.
Publicado: (2017)

The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences
por: Yeats, Corin, et al.
Publicado: (2011)

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
por: Lees, Jonathan G., et al.
Publicado: (2014)

InterPro in 2022
por: Paysan-Lafosse, Typhaine, et al.
Publicado: (2022)

Structural and energetic analyses of SARS-CoV-2 N-terminal domain characterise sugar binding pockets and suggest putative impacts of variants on COVID-19 transmission
por: Lam, Su Datt, et al.
Publicado: (2022)

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis
por: Lees, Jonathan, et al.
Publicado: (2012)

GotEnzymes: an extensive database of enzyme parameter predictions
por: Li, Feiran, et al.
Publicado: (2022)

EPD in 2020: enhanced data visualization and extension to ncRNA promoters
por: Meylan, Patrick, et al.
Publicado: (2020)

The InterPro protein families database: the classification resource after 15 years
por: Mitchell, Alex, et al.
Publicado: (2014)

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
por: Marchler-Bauer, Aron, et al.
Publicado: (2017)

TransportDB 2.0: a database for exploring membrane transporters in sequenced genomes from all domains of life
por: Elbourne, Liam D. H., et al.
Publicado: (2017)

SEA version 3.0: a comprehensive extension and update of the Super-Enhancer archive
por: Chen, Chuangeng, et al.
Publicado: (2020)

QTLbase2: an enhanced catalog of human quantitative trait loci on extensive molecular phenotypes
por: Huang, Dandan, et al.
Publicado: (2022)

ECOD: new developments in the evolutionary classification of domains
por: Schaeffer, R. Dustin, et al.
Publicado: (2017)

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium
por: Bagaev, Dmitry V, et al.
Publicado: (2020)

20 years of the SMART protein domain annotation resource
por: Letunic, Ivica, et al.
Publicado: (2018)

InterPro in 2019: improving coverage, classification and access to protein sequence annotations
por: Mitchell, Alex L, et al.
Publicado: (2019)

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
por: Mi, Huaiyu, et al.
Publicado: (2020)

MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer
por: Gauthier, Nicholas Paul, et al.
Publicado: (2016)

The human-induced pluripotent stem cell initiative—data resources for cellular genetics
por: Streeter, Ian, et al.
Publicado: (2017)

Biological impact of mutually exclusive exon switching
por: Lam, Su Datt, et al.
Publicado: (2021)

The international Genome sample resource (IGSR): A worldwide collection of genome variation incorporating the 1000 Genomes Project data
por: Clarke, Laura, et al.
Publicado: (2017)

Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds
por: Bordin, Nicola, et al.
Publicado: (2021)

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
por: Altenhoff, Adrian M, et al.
Publicado: (2018)

PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features
por: Gandhimathi, Arumugam, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_dmlpb6pvqen29ot1ed9lss055n