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SuperDRUG2: a one stop resource for approved/marketed drugs
Regular monitoring of drug regulatory agency web sites and similar resources for information on new drug approvals and changes to legal status of marketed drugs is impractical. It requires navigation through several resources to find complete information about a drug as none of the publicly accessib...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753395/ https://www.ncbi.nlm.nih.gov/pubmed/29140469 http://dx.doi.org/10.1093/nar/gkx1088 |
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author | Siramshetty, Vishal B Eckert, Oliver Andreas Gohlke, Björn-Oliver Goede, Andrean Chen, Qiaofeng Devarakonda, Prashanth Preissner, Saskia Preissner, Robert |
author_facet | Siramshetty, Vishal B Eckert, Oliver Andreas Gohlke, Björn-Oliver Goede, Andrean Chen, Qiaofeng Devarakonda, Prashanth Preissner, Saskia Preissner, Robert |
author_sort | Siramshetty, Vishal B |
collection | PubMed |
description | Regular monitoring of drug regulatory agency web sites and similar resources for information on new drug approvals and changes to legal status of marketed drugs is impractical. It requires navigation through several resources to find complete information about a drug as none of the publicly accessible drug databases provide all features essential to complement in silico drug discovery. Here, we propose SuperDRUG2 (http://cheminfo.charite.de/superdrug2) as a comprehensive knowledge-base of approved and marketed drugs. We provide the largest collection of drugs (containing 4587 active pharmaceutical ingredients) which include small molecules, biological products and other drugs. The database is intended to serve as a one-stop resource providing data on: chemical structures, regulatory details, indications, drug targets, side-effects, physicochemical properties, pharmacokinetics and drug–drug interactions. We provide a 3D-superposition feature that facilitates estimation of the fit of a drug in the active site of a target with a known ligand bound to it. Apart from multiple other search options, we introduced pharmacokinetics simulation as a unique feature that allows users to visualise the ‘plasma concentration versus time’ profile for a given dose of drug with few other adjustable parameters to simulate the kinetics in a healthy individual and poor or extensive metabolisers. |
format | Online Article Text |
id | pubmed-5753395 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57533952018-01-05 SuperDRUG2: a one stop resource for approved/marketed drugs Siramshetty, Vishal B Eckert, Oliver Andreas Gohlke, Björn-Oliver Goede, Andrean Chen, Qiaofeng Devarakonda, Prashanth Preissner, Saskia Preissner, Robert Nucleic Acids Res Database Issue Regular monitoring of drug regulatory agency web sites and similar resources for information on new drug approvals and changes to legal status of marketed drugs is impractical. It requires navigation through several resources to find complete information about a drug as none of the publicly accessible drug databases provide all features essential to complement in silico drug discovery. Here, we propose SuperDRUG2 (http://cheminfo.charite.de/superdrug2) as a comprehensive knowledge-base of approved and marketed drugs. We provide the largest collection of drugs (containing 4587 active pharmaceutical ingredients) which include small molecules, biological products and other drugs. The database is intended to serve as a one-stop resource providing data on: chemical structures, regulatory details, indications, drug targets, side-effects, physicochemical properties, pharmacokinetics and drug–drug interactions. We provide a 3D-superposition feature that facilitates estimation of the fit of a drug in the active site of a target with a known ligand bound to it. Apart from multiple other search options, we introduced pharmacokinetics simulation as a unique feature that allows users to visualise the ‘plasma concentration versus time’ profile for a given dose of drug with few other adjustable parameters to simulate the kinetics in a healthy individual and poor or extensive metabolisers. Oxford University Press 2018-01-04 2017-11-11 /pmc/articles/PMC5753395/ /pubmed/29140469 http://dx.doi.org/10.1093/nar/gkx1088 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Siramshetty, Vishal B Eckert, Oliver Andreas Gohlke, Björn-Oliver Goede, Andrean Chen, Qiaofeng Devarakonda, Prashanth Preissner, Saskia Preissner, Robert SuperDRUG2: a one stop resource for approved/marketed drugs |
title | SuperDRUG2: a one stop resource for approved/marketed drugs |
title_full | SuperDRUG2: a one stop resource for approved/marketed drugs |
title_fullStr | SuperDRUG2: a one stop resource for approved/marketed drugs |
title_full_unstemmed | SuperDRUG2: a one stop resource for approved/marketed drugs |
title_short | SuperDRUG2: a one stop resource for approved/marketed drugs |
title_sort | superdrug2: a one stop resource for approved/marketed drugs |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753395/ https://www.ncbi.nlm.nih.gov/pubmed/29140469 http://dx.doi.org/10.1093/nar/gkx1088 |
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