Cargando…

New MYC IHC Classifier Integrating Quantitative Architecture Parameters to Predict MYC Gene Translocation in Diffuse Large B-Cell Lymphoma

A new automated MYC IHC classifier based on bivariate logistic regression is presented. The predictor relies on image analysis developed with the open-source ImageJ platform. From a histologic section immunostained for MYC protein, 2 dimensionless quantitative variables are extracted: (a) relative d...

Descripción completa

Detalles Bibliográficos
Autores principales: Bigras, Gilbert, Dong, Wei-Feng, Canil, Sarah, Lai, Raymond, Morel, Didier, Swanson, Paul E., Izevbaye, Iyare
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753811/
https://www.ncbi.nlm.nih.gov/pubmed/27093450
http://dx.doi.org/10.1097/PAI.0000000000000367
_version_ 1783290324505853952
author Bigras, Gilbert
Dong, Wei-Feng
Canil, Sarah
Lai, Raymond
Morel, Didier
Swanson, Paul E.
Izevbaye, Iyare
author_facet Bigras, Gilbert
Dong, Wei-Feng
Canil, Sarah
Lai, Raymond
Morel, Didier
Swanson, Paul E.
Izevbaye, Iyare
author_sort Bigras, Gilbert
collection PubMed
description A new automated MYC IHC classifier based on bivariate logistic regression is presented. The predictor relies on image analysis developed with the open-source ImageJ platform. From a histologic section immunostained for MYC protein, 2 dimensionless quantitative variables are extracted: (a) relative distance between nuclei positive for MYC IHC based on euclidean minimum spanning tree graph and (b) coefficient of variation of the MYC IHC stain intensity among MYC IHC-positive nuclei. Distance between positive nuclei is suggested to inversely correlate MYC gene rearrangement status, whereas coefficient of variation is suggested to inversely correlate physiological regulation of MYC protein expression. The bivariate classifier was compared with 2 other MYC IHC classifiers (based on percentage of MYC IHC positive nuclei), all tested on 113 lymphomas including mostly diffuse large B-cell lymphomas with known MYC fluorescent in situ hybridization (FISH) status. The bivariate classifier strongly outperformed the “percentage of MYC IHC-positive nuclei” methods to predict MYC+ FISH status with 100% sensitivity (95% confidence interval, 94-100) associated with 80% specificity. The test is rapidly performed and might at a minimum provide primary IHC screening for MYC gene rearrangement status in diffuse large B-cell lymphomas. Furthermore, as this bivariate classifier actually predicts “permanent overexpressed MYC protein status,” it might identify nontranslocation-related chromosomal anomalies missed by FISH.
format Online
Article
Text
id pubmed-5753811
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Lippincott Williams & Wilkins
record_format MEDLINE/PubMed
spelling pubmed-57538112018-01-31 New MYC IHC Classifier Integrating Quantitative Architecture Parameters to Predict MYC Gene Translocation in Diffuse Large B-Cell Lymphoma Bigras, Gilbert Dong, Wei-Feng Canil, Sarah Lai, Raymond Morel, Didier Swanson, Paul E. Izevbaye, Iyare Appl Immunohistochem Mol Morphol Research Articles A new automated MYC IHC classifier based on bivariate logistic regression is presented. The predictor relies on image analysis developed with the open-source ImageJ platform. From a histologic section immunostained for MYC protein, 2 dimensionless quantitative variables are extracted: (a) relative distance between nuclei positive for MYC IHC based on euclidean minimum spanning tree graph and (b) coefficient of variation of the MYC IHC stain intensity among MYC IHC-positive nuclei. Distance between positive nuclei is suggested to inversely correlate MYC gene rearrangement status, whereas coefficient of variation is suggested to inversely correlate physiological regulation of MYC protein expression. The bivariate classifier was compared with 2 other MYC IHC classifiers (based on percentage of MYC IHC positive nuclei), all tested on 113 lymphomas including mostly diffuse large B-cell lymphomas with known MYC fluorescent in situ hybridization (FISH) status. The bivariate classifier strongly outperformed the “percentage of MYC IHC-positive nuclei” methods to predict MYC+ FISH status with 100% sensitivity (95% confidence interval, 94-100) associated with 80% specificity. The test is rapidly performed and might at a minimum provide primary IHC screening for MYC gene rearrangement status in diffuse large B-cell lymphomas. Furthermore, as this bivariate classifier actually predicts “permanent overexpressed MYC protein status,” it might identify nontranslocation-related chromosomal anomalies missed by FISH. Lippincott Williams & Wilkins 2018-01 2016-04-20 /pmc/articles/PMC5753811/ /pubmed/27093450 http://dx.doi.org/10.1097/PAI.0000000000000367 Text en Copyright © 2016 The Author(s). Published by Wolters Kluwer Health, Inc. This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/) (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially. http://creativecommons.org/licenses/by-nc-nd/4.0/
spellingShingle Research Articles
Bigras, Gilbert
Dong, Wei-Feng
Canil, Sarah
Lai, Raymond
Morel, Didier
Swanson, Paul E.
Izevbaye, Iyare
New MYC IHC Classifier Integrating Quantitative Architecture Parameters to Predict MYC Gene Translocation in Diffuse Large B-Cell Lymphoma
title New MYC IHC Classifier Integrating Quantitative Architecture Parameters to Predict MYC Gene Translocation in Diffuse Large B-Cell Lymphoma
title_full New MYC IHC Classifier Integrating Quantitative Architecture Parameters to Predict MYC Gene Translocation in Diffuse Large B-Cell Lymphoma
title_fullStr New MYC IHC Classifier Integrating Quantitative Architecture Parameters to Predict MYC Gene Translocation in Diffuse Large B-Cell Lymphoma
title_full_unstemmed New MYC IHC Classifier Integrating Quantitative Architecture Parameters to Predict MYC Gene Translocation in Diffuse Large B-Cell Lymphoma
title_short New MYC IHC Classifier Integrating Quantitative Architecture Parameters to Predict MYC Gene Translocation in Diffuse Large B-Cell Lymphoma
title_sort new myc ihc classifier integrating quantitative architecture parameters to predict myc gene translocation in diffuse large b-cell lymphoma
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753811/
https://www.ncbi.nlm.nih.gov/pubmed/27093450
http://dx.doi.org/10.1097/PAI.0000000000000367
work_keys_str_mv AT bigrasgilbert newmycihcclassifierintegratingquantitativearchitectureparameterstopredictmycgenetranslocationindiffuselargebcelllymphoma
AT dongweifeng newmycihcclassifierintegratingquantitativearchitectureparameterstopredictmycgenetranslocationindiffuselargebcelllymphoma
AT canilsarah newmycihcclassifierintegratingquantitativearchitectureparameterstopredictmycgenetranslocationindiffuselargebcelllymphoma
AT lairaymond newmycihcclassifierintegratingquantitativearchitectureparameterstopredictmycgenetranslocationindiffuselargebcelllymphoma
AT moreldidier newmycihcclassifierintegratingquantitativearchitectureparameterstopredictmycgenetranslocationindiffuselargebcelllymphoma
AT swansonpaule newmycihcclassifierintegratingquantitativearchitectureparameterstopredictmycgenetranslocationindiffuselargebcelllymphoma
AT izevbayeiyare newmycihcclassifierintegratingquantitativearchitectureparameterstopredictmycgenetranslocationindiffuselargebcelllymphoma