Cargando…

Cattle infection response network and its functional modules

BACKGROUND: Weighted Gene Co-expression Network analysis, a powerful technique used to extract co-expressed gene pattern from mRNA expression data, was constructed to infer common immune strategies used by cattle in response to five different bacterial species (Escherichia coli, Mycobacterium avium,...

Descripción completa

Detalles Bibliográficos
Autores principales:	Beiki, Hamid, Pakdel, Abbas, Javaremi, Ardeshir Nejati, Masoudi-Nejad, Ali, Reecy, James M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5755453/ https://www.ncbi.nlm.nih.gov/pubmed/29301495 http://dx.doi.org/10.1186/s12865-017-0238-4

Ejemplares similares

Large-scale gene co-expression network as a source of functional annotation for cattle genes
por: Beiki, Hamid, et al.
Publicado: (2016)

Random Regression Models Using Legendre Polynomials to Estimate Genetic Parameters for Test-day Milk Protein Yields in Iranian Holstein Dairy Cattle
por: Naserkheil, Masoumeh, et al.
Publicado: (2016)

Genome-wide association studies for methane emission and ruminal volatile fatty acids using Holstein cattle sequence data
por: Jalil Sarghale, Ali, et al.
Publicado: (2020)

Integration of machine learning and meta-analysis identifies the transcriptomic bio-signature of mastitis disease in cattle
por: Sharifi, Somayeh, et al.
Publicado: (2018)

Systems Biology–Derived Genetic Signatures of Mastitis in Dairy Cattle: A New Avenue for Drug Repurposing
por: Sharifi, Somayeh, et al.
Publicado: (2021)

Genomic comparisons of Persian Kurdish, Persian Arabian and American Thoroughbred horse populations
por: Yousefi-Mashouf, Navid, et al.
Publicado: (2021)

Analysis of the enzyme network involved in cattle milk production using graph theory
por: Ghorbani, Sholeh, et al.
Publicado: (2015)

Integrated Analysis of lncRNAs, mRNAs, and TFs to Identify Regulatory Networks Underlying MAP Infection in Cattle
por: Heidari, Maryam, et al.
Publicado: (2021)

Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition
por: Moradi, Mohammad Hossein, et al.
Publicado: (2012)

Differential network analysis and protein-protein interaction study reveals active protein modules in glucocorticoid resistance for infant acute lymphoblastic leukemia
por: Mousavian, Zaynab, et al.
Publicado: (2019)

Hitchhiking Mapping of Candidate Regions Associated with Fat Deposition in Iranian Thin and Fat Tail Sheep Breeds Suggests New Insights into Molecular Aspects of Fat Tail Selection
por: Moradi, Mohammad Hossein, et al.
Publicado: (2022)

C-element: A New Clustering Algorithm to Find High Quality Functional Modules in PPI Networks
por: Ghasemi, Mahdieh, et al.
Publicado: (2013)

Reconstruction of an Integrated Genome-Scale Co-Expression Network Reveals Key Modules Involved in Lung Adenocarcinoma
por: Bidkhori, Gholamreza, et al.
Publicado: (2013)

Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle
por: Mateescu, Raluca G., et al.
Publicado: (2017)

A Cell Derived Active Contour (CDAC) Method for Robust Tracking in Low Frame Rate, Low Contrast Phase Microscopy - an Example: The Human hNT Astrocyte
por: Nejati Javaremi, Alireza, et al.
Publicado: (2013)

Differential Expression of the Alpha S1 Casein and Beta-Lactoglobulin Genes in Different Physiological Stages of the Adani Goats Mammary Glands
por: Morammazi, Salim, et al.
Publicado: (2016)

CatbNet: A Multi Network Analyzer for Comparing and Analyzing the Topology of Biological Networks
por: Pournoor, Ehsan, et al.
Publicado: (2019)

Expectation propagation for large scale Bayesian inference of non-linear molecular networks from perturbation data
por: Narimani, Zahra, et al.
Publicado: (2017)

Nonparametric Simulation of Signal Transduction Networks with Semi-Synchronized Update
por: Nassiri, Isar, et al.
Publicado: (2012)

Drug-target and disease networks: polypharmacology in the post-genomic era
por: Masoudi-Nejad, Ali, et al.
Publicado: (2013)

Analysis of Genome-scale Expression Network in Four Major Bacterial Residents of Cystic Fibrosis Lung
por: Hosseinkhan, Nazanin, et al.
Publicado: (2014)

Genome-wide study of linkage disequilibrium, population structure, and inbreeding in Iranian indigenous sheep breeds
por: Barani, S., et al.
Publicado: (2023)

Computational Prediction of Protein–Protein Interaction Networks: Algo-rithms and Resources
por: Zahiri, Javad, et al.
Publicado: (2013)

Controllability in Cancer Metabolic Networks According to Drug Targets as Driver Nodes
por: Asgari, Yazdan, et al.
Publicado: (2013)

Synthetic repurposing of drugs against hypertension: a datamining method based on association rules and a novel discrete algorithm
por: Masoudi-Sobhanzadeh, Yosef, et al.
Publicado: (2020)

Patterns Prediction of Chemotherapy Sensitivity in Cancer Cell lines Using FTIR Spectrum, Neural Network and Principal Components Analysis
por: Zendehdel, Rezvan, et al.
Publicado: (2012)

Meet Our Editorial Board Member
por: Masoudi-Nejad, Ali
Publicado: (2020)

Appropriate time to apply control input to complex dynamical systems
por: Ebrahimi, Ali, et al.
Publicado: (2020)

Genome-Wide Association Study for Fatty Acid Composition in American Angus Cattle
por: Dawood, Muhammad, et al.
Publicado: (2021)

Identification of biomarkers in common chronic lung diseases by co-expression networks and drug-target interactions analysis
por: Maghsoudloo, Mazaher, et al.
Publicado: (2020)

Gene expression in tonsils in swine following infection with porcine reproductive and respiratory syndrome virus
por: Dong, Qian, et al.
Publicado: (2021)

CytoKavosh: A Cytoscape Plug-In for Finding Network Motifs in Large Biological Networks
por: Masoudi-Nejad, Ali, et al.
Publicado: (2012)

QuateXelero: An Accelerated Exact Network Motif Detection Algorithm
por: Khakabimamaghani, Sahand, et al.
Publicado: (2013)

Detection of novel biomarkers for early detection of Non-Muscle-Invasive Bladder Cancer using Competing Endogenous RNA network analysis
por: Kouhsar, Morteza, et al.
Publicado: (2019)

Identification of Key Components in Colon Adenocarcinoma Using Transcriptome to Interactome Multilayer Framework
por: Pournoor, Ehsan, et al.
Publicado: (2020)

A propagation-based seed-centric local community detection for multilayer environment: The case study of colon adenocarcinoma
por: Pournoor, Ehsan, et al.
Publicado: (2021)

Genome-wide association study of infectious bovine keratoconjunctivitis in Angus cattle
por: Kizilkaya, Kadir, et al.
Publicado: (2013)

Food co-consumption network as a new approach to dietary pattern in non-alcoholic fatty liver disease
por: Naghizadeh, Mohammad Mehdi, et al.
Publicado: (2023)

FeatureSelect: a software for feature selection based on machine learning approaches
por: Masoudi-Sobhanzadeh, Yosef, et al.
Publicado: (2019)

A fuzzy logic-based computational method for the repurposing of drugs against COVID-19
por: Masoudi-Sobhanzadeh, Yosef, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_58n98ev2t6f7d1bl2rpgm1ml7i