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Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2

Hirshfeld atom refinement (HAR) is a novel X-ray structure refinement technique that employs aspherical atomic scattering factors obtained from stockholder partitioning of a theoretically determined tailor-made static electron density. HAR overcomes many of the known limitations of independent atom...

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Autores principales: Fugel, Malte, Jayatilaka, Dylan, Hupf, Emanuel, Overgaard, Jacob, Hathwar, Venkatesha R., Macchi, Piero, Turner, Michael J., Howard, Judith A. K., Dolomanov, Oleg V., Puschmann, Horst, Iversen, Bo B., Bürgi, Hans-Beat, Grabowsky, Simon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5755575/
https://www.ncbi.nlm.nih.gov/pubmed/29354269
http://dx.doi.org/10.1107/S2052252517015548
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author Fugel, Malte
Jayatilaka, Dylan
Hupf, Emanuel
Overgaard, Jacob
Hathwar, Venkatesha R.
Macchi, Piero
Turner, Michael J.
Howard, Judith A. K.
Dolomanov, Oleg V.
Puschmann, Horst
Iversen, Bo B.
Bürgi, Hans-Beat
Grabowsky, Simon
author_facet Fugel, Malte
Jayatilaka, Dylan
Hupf, Emanuel
Overgaard, Jacob
Hathwar, Venkatesha R.
Macchi, Piero
Turner, Michael J.
Howard, Judith A. K.
Dolomanov, Oleg V.
Puschmann, Horst
Iversen, Bo B.
Bürgi, Hans-Beat
Grabowsky, Simon
author_sort Fugel, Malte
collection PubMed
description Hirshfeld atom refinement (HAR) is a novel X-ray structure refinement technique that employs aspherical atomic scattering factors obtained from stockholder partitioning of a theoretically determined tailor-made static electron density. HAR overcomes many of the known limitations of independent atom modelling (IAM), such as too short element–hydrogen distances, r(X—H), or too large atomic displacement parameters (ADPs). This study probes the accuracy and precision of anisotropic hydrogen and non-hydrogen ADPs and of r(X—H) values obtained from HAR. These quantities are compared and found to agree with those obtained from (i) accurate neutron diffraction data measured at the same temperatures as the X-ray data and (ii) multipole modelling (MM), an established alternative method for interpreting X-ray diffraction data with the help of aspherical atomic scattering factors. Results are presented for three chemically different systems: the aromatic hydro­carbon rubrene (orthorhombic 5,6,11,12-tetra­phenyl­tetracene), a co-crystal of zwitterionic betaine, imidazolium cations and picrate anions (BIPa), and the salt potassium hydrogen oxalate (KHOx). The non-hydrogen HAR-ADPs are as accurate and precise as the MM-ADPs. Both show excellent agreement with the neutron-based values and are superior to IAM-ADPs. The anisotropic hydrogen HAR-ADPs show a somewhat larger deviation from neutron-based values than the hydrogen SHADE-ADPs used in MM. Element–hydrogen bond lengths from HAR are in excellent agreement with those obtained from neutron diffraction experiments, although they are somewhat less precise. The residual density contour maps after HAR show fewer features than those after MM. Calculating the static electron density with the def2-TZVP basis set instead of the simpler def2-SVP one does not improve the refinement results significantly. All HARs were performed within the recently introduced HARt option implemented in the Olex2 program. They are easily launched inside its graphical user interface following a conventional IAM.
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spelling pubmed-57555752018-01-19 Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2 Fugel, Malte Jayatilaka, Dylan Hupf, Emanuel Overgaard, Jacob Hathwar, Venkatesha R. Macchi, Piero Turner, Michael J. Howard, Judith A. K. Dolomanov, Oleg V. Puschmann, Horst Iversen, Bo B. Bürgi, Hans-Beat Grabowsky, Simon IUCrJ Research Papers Hirshfeld atom refinement (HAR) is a novel X-ray structure refinement technique that employs aspherical atomic scattering factors obtained from stockholder partitioning of a theoretically determined tailor-made static electron density. HAR overcomes many of the known limitations of independent atom modelling (IAM), such as too short element–hydrogen distances, r(X—H), or too large atomic displacement parameters (ADPs). This study probes the accuracy and precision of anisotropic hydrogen and non-hydrogen ADPs and of r(X—H) values obtained from HAR. These quantities are compared and found to agree with those obtained from (i) accurate neutron diffraction data measured at the same temperatures as the X-ray data and (ii) multipole modelling (MM), an established alternative method for interpreting X-ray diffraction data with the help of aspherical atomic scattering factors. Results are presented for three chemically different systems: the aromatic hydro­carbon rubrene (orthorhombic 5,6,11,12-tetra­phenyl­tetracene), a co-crystal of zwitterionic betaine, imidazolium cations and picrate anions (BIPa), and the salt potassium hydrogen oxalate (KHOx). The non-hydrogen HAR-ADPs are as accurate and precise as the MM-ADPs. Both show excellent agreement with the neutron-based values and are superior to IAM-ADPs. The anisotropic hydrogen HAR-ADPs show a somewhat larger deviation from neutron-based values than the hydrogen SHADE-ADPs used in MM. Element–hydrogen bond lengths from HAR are in excellent agreement with those obtained from neutron diffraction experiments, although they are somewhat less precise. The residual density contour maps after HAR show fewer features than those after MM. Calculating the static electron density with the def2-TZVP basis set instead of the simpler def2-SVP one does not improve the refinement results significantly. All HARs were performed within the recently introduced HARt option implemented in the Olex2 program. They are easily launched inside its graphical user interface following a conventional IAM. International Union of Crystallography 2018-01-01 /pmc/articles/PMC5755575/ /pubmed/29354269 http://dx.doi.org/10.1107/S2052252517015548 Text en © Malte Fugel et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Fugel, Malte
Jayatilaka, Dylan
Hupf, Emanuel
Overgaard, Jacob
Hathwar, Venkatesha R.
Macchi, Piero
Turner, Michael J.
Howard, Judith A. K.
Dolomanov, Oleg V.
Puschmann, Horst
Iversen, Bo B.
Bürgi, Hans-Beat
Grabowsky, Simon
Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2
title Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2
title_full Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2
title_fullStr Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2
title_full_unstemmed Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2
title_short Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2
title_sort probing the accuracy and precision of hirshfeld atom refinement with hart interfaced with olex2
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5755575/
https://www.ncbi.nlm.nih.gov/pubmed/29354269
http://dx.doi.org/10.1107/S2052252517015548
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