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Why georeferencing matters: Introducing a practical protocol to prepare species occurrence records for spatial analysis

Species Distribution Models (SDMs) are widely used to understand environmental controls on species’ ranges and to forecast species range shifts in response to climatic changes. The quality of input data is crucial determinant of the model's accuracy. While museum records can be useful sources o...

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Autores principales: Bloom, Trevor D. S., Flower, Aquila, DeChaine, Eric G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5756859/
https://www.ncbi.nlm.nih.gov/pubmed/29321912
http://dx.doi.org/10.1002/ece3.3516
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author Bloom, Trevor D. S.
Flower, Aquila
DeChaine, Eric G.
author_facet Bloom, Trevor D. S.
Flower, Aquila
DeChaine, Eric G.
author_sort Bloom, Trevor D. S.
collection PubMed
description Species Distribution Models (SDMs) are widely used to understand environmental controls on species’ ranges and to forecast species range shifts in response to climatic changes. The quality of input data is crucial determinant of the model's accuracy. While museum records can be useful sources of presence data for many species, they do not always include accurate geographic coordinates. Therefore, actual locations must be verified through the process of georeferencing. We present a practical, standardized manual georeferencing method (the Spatial Analysis Georeferencing Accuracy (SAGA) protocol) to classify the spatial resolution of museum records specifically for building improved SDMs. We used the high‐elevation plant Saxifraga austromontana Wiegand (Saxifragaceae) as a case study to test the effect of using this protocol when developing an SDM. In MAXENT, we generated and compared SDMs using a comprehensive occurrence dataset that had undergone three different levels of georeferencing: (1) trained using all publicly available herbarium records of the species, minus outliers (2) trained using herbarium records claimed to be previously georeferenced, and (3) trained using herbarium records that we have manually georeferenced to a ≤ 1‐km resolution using the SAGA protocol. Model predictions of suitable habitat for S. austromontana differed greatly depending on georeferencing level. The SDMs fitted with presence locations georeferenced using SAGA outperformed all others. Differences among models were exacerbated for future distribution predictions. Under rapid climate change, accurately forecasting the response of species becomes increasingly important. Failure to georeference location data and cull inaccurate samples leads to erroneous model output, limiting the utility of spatial analyses. We present a simple, standardized georeferencing method to be adopted by curators, ecologists, and modelers to improve the geographic accuracy of museum records and SDM predictions.
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spelling pubmed-57568592018-01-10 Why georeferencing matters: Introducing a practical protocol to prepare species occurrence records for spatial analysis Bloom, Trevor D. S. Flower, Aquila DeChaine, Eric G. Ecol Evol Original Research Species Distribution Models (SDMs) are widely used to understand environmental controls on species’ ranges and to forecast species range shifts in response to climatic changes. The quality of input data is crucial determinant of the model's accuracy. While museum records can be useful sources of presence data for many species, they do not always include accurate geographic coordinates. Therefore, actual locations must be verified through the process of georeferencing. We present a practical, standardized manual georeferencing method (the Spatial Analysis Georeferencing Accuracy (SAGA) protocol) to classify the spatial resolution of museum records specifically for building improved SDMs. We used the high‐elevation plant Saxifraga austromontana Wiegand (Saxifragaceae) as a case study to test the effect of using this protocol when developing an SDM. In MAXENT, we generated and compared SDMs using a comprehensive occurrence dataset that had undergone three different levels of georeferencing: (1) trained using all publicly available herbarium records of the species, minus outliers (2) trained using herbarium records claimed to be previously georeferenced, and (3) trained using herbarium records that we have manually georeferenced to a ≤ 1‐km resolution using the SAGA protocol. Model predictions of suitable habitat for S. austromontana differed greatly depending on georeferencing level. The SDMs fitted with presence locations georeferenced using SAGA outperformed all others. Differences among models were exacerbated for future distribution predictions. Under rapid climate change, accurately forecasting the response of species becomes increasingly important. Failure to georeference location data and cull inaccurate samples leads to erroneous model output, limiting the utility of spatial analyses. We present a simple, standardized georeferencing method to be adopted by curators, ecologists, and modelers to improve the geographic accuracy of museum records and SDM predictions. John Wiley and Sons Inc. 2017-12-06 /pmc/articles/PMC5756859/ /pubmed/29321912 http://dx.doi.org/10.1002/ece3.3516 Text en © 2017 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Bloom, Trevor D. S.
Flower, Aquila
DeChaine, Eric G.
Why georeferencing matters: Introducing a practical protocol to prepare species occurrence records for spatial analysis
title Why georeferencing matters: Introducing a practical protocol to prepare species occurrence records for spatial analysis
title_full Why georeferencing matters: Introducing a practical protocol to prepare species occurrence records for spatial analysis
title_fullStr Why georeferencing matters: Introducing a practical protocol to prepare species occurrence records for spatial analysis
title_full_unstemmed Why georeferencing matters: Introducing a practical protocol to prepare species occurrence records for spatial analysis
title_short Why georeferencing matters: Introducing a practical protocol to prepare species occurrence records for spatial analysis
title_sort why georeferencing matters: introducing a practical protocol to prepare species occurrence records for spatial analysis
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5756859/
https://www.ncbi.nlm.nih.gov/pubmed/29321912
http://dx.doi.org/10.1002/ece3.3516
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