Cargando…
Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group
OBJECTIVE: Species of the Baetis rhodani group are among the most widespread mayflies of the Palearctic region. However, frequent occurrence of morphologically cryptic species complicates the identification of sympatric species. Here, we proposed and tested a method for the fast, accurate, and cost-...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5759225/ https://www.ncbi.nlm.nih.gov/pubmed/29310715 http://dx.doi.org/10.1186/s13104-017-3115-6 |
_version_ | 1783291157177958400 |
---|---|
author | Bisconti, Roberta Tenchini, Roberta Belfiore, Carlo Nascetti, Giuseppe Canestrelli, Daniele |
author_facet | Bisconti, Roberta Tenchini, Roberta Belfiore, Carlo Nascetti, Giuseppe Canestrelli, Daniele |
author_sort | Bisconti, Roberta |
collection | PubMed |
description | OBJECTIVE: Species of the Baetis rhodani group are among the most widespread mayflies of the Palearctic region. However, frequent occurrence of morphologically cryptic species complicates the identification of sympatric species. Here, we proposed and tested a method for the fast, accurate, and cost-effective assignment of a large number of individuals to their putative species, based on high resolution melting profiles of a standard mitochondrial gene fragment. We tested this method using a system of three recently identified cryptic species inhabiting the Tyrrhenian Islands (western Mediterranean basin). RESULTS: Highly species-specific high resolution melting profiles were obtained, allowing the unequivocal attribution of each individual to the respective species. This assay provides a convenient and easily customizable alternative to traditional barcoding approaches, provided that the mayfly taxa occurring within the geographic area of interest have been previously identified and their high resolution melting profiles assessed. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13104-017-3115-6) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5759225 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57592252018-01-10 Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group Bisconti, Roberta Tenchini, Roberta Belfiore, Carlo Nascetti, Giuseppe Canestrelli, Daniele BMC Res Notes Research Note OBJECTIVE: Species of the Baetis rhodani group are among the most widespread mayflies of the Palearctic region. However, frequent occurrence of morphologically cryptic species complicates the identification of sympatric species. Here, we proposed and tested a method for the fast, accurate, and cost-effective assignment of a large number of individuals to their putative species, based on high resolution melting profiles of a standard mitochondrial gene fragment. We tested this method using a system of three recently identified cryptic species inhabiting the Tyrrhenian Islands (western Mediterranean basin). RESULTS: Highly species-specific high resolution melting profiles were obtained, allowing the unequivocal attribution of each individual to the respective species. This assay provides a convenient and easily customizable alternative to traditional barcoding approaches, provided that the mayfly taxa occurring within the geographic area of interest have been previously identified and their high resolution melting profiles assessed. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13104-017-3115-6) contains supplementary material, which is available to authorized users. BioMed Central 2018-01-08 /pmc/articles/PMC5759225/ /pubmed/29310715 http://dx.doi.org/10.1186/s13104-017-3115-6 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Note Bisconti, Roberta Tenchini, Roberta Belfiore, Carlo Nascetti, Giuseppe Canestrelli, Daniele Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group |
title | Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group |
title_full | Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group |
title_fullStr | Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group |
title_full_unstemmed | Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group |
title_short | Fast and accurate identification of cryptic and sympatric mayfly species of the Baetis rhodani group |
title_sort | fast and accurate identification of cryptic and sympatric mayfly species of the baetis rhodani group |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5759225/ https://www.ncbi.nlm.nih.gov/pubmed/29310715 http://dx.doi.org/10.1186/s13104-017-3115-6 |
work_keys_str_mv | AT biscontiroberta fastandaccurateidentificationofcrypticandsympatricmayflyspeciesofthebaetisrhodanigroup AT tenchiniroberta fastandaccurateidentificationofcrypticandsympatricmayflyspeciesofthebaetisrhodanigroup AT belfiorecarlo fastandaccurateidentificationofcrypticandsympatricmayflyspeciesofthebaetisrhodanigroup AT nascettigiuseppe fastandaccurateidentificationofcrypticandsympatricmayflyspeciesofthebaetisrhodanigroup AT canestrellidaniele fastandaccurateidentificationofcrypticandsympatricmayflyspeciesofthebaetisrhodanigroup |