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Sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo
Cancer stem-like cells (CSCs) are a topic of increasing importance in cancer research, but are difficult to study due to their rarity and ability to rapidly divide to produce non-self-cells. We developed a simple model to describe transitions between aldehyde dehydrogenase (ALDH) positive CSCs and A...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5762314/ https://www.ncbi.nlm.nih.gov/pubmed/29340046 http://dx.doi.org/10.18632/oncotarget.22693 |
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author | Pearson, Alexander T. Ingram, Patrick Bai, Shoumei O'Hayer, Patrick Chung, Jaehoon Yoon, Euisik Jackson, Trachette Buckanovich, Ronald J. |
author_facet | Pearson, Alexander T. Ingram, Patrick Bai, Shoumei O'Hayer, Patrick Chung, Jaehoon Yoon, Euisik Jackson, Trachette Buckanovich, Ronald J. |
author_sort | Pearson, Alexander T. |
collection | PubMed |
description | Cancer stem-like cells (CSCs) are a topic of increasing importance in cancer research, but are difficult to study due to their rarity and ability to rapidly divide to produce non-self-cells. We developed a simple model to describe transitions between aldehyde dehydrogenase (ALDH) positive CSCs and ALDH(-) bulk ovarian cancer cells. Microfluidics device-isolated single cell experiments demonstrated that ALDH+ cells were more proliferative than ALDH(-) cells. Based on our model we used ALDH+ and ALDH(-) cell division and proliferation properties to develop an empiric sampling algorithm and predict growth rate and CSC proportion for both ovarian cancer cell line and primary ovarian cancer cells, in-vitro and in-vivo. In both cell line and primary ovarian cancer cells, the algorithm predictions demonstrated a high correlation with observed ovarian cancer cell proliferation and CSC proportion. High correlation was maintained even in the presence of the EGF-like domain multiple 6 (EGFL6), a growth factor which changes ALDH+ cell asymmetric division rates and thereby tumor growth rates. Thus, based on sampling from the heterogeneity of in-vitro cell growth and division characteristics of a few hundred single cells, the simple algorithm described here provides rapid and inexpensive means to generate predictions that correlate with in-vivo tumor growth. |
format | Online Article Text |
id | pubmed-5762314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-57623142018-01-16 Sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo Pearson, Alexander T. Ingram, Patrick Bai, Shoumei O'Hayer, Patrick Chung, Jaehoon Yoon, Euisik Jackson, Trachette Buckanovich, Ronald J. Oncotarget Research Paper Cancer stem-like cells (CSCs) are a topic of increasing importance in cancer research, but are difficult to study due to their rarity and ability to rapidly divide to produce non-self-cells. We developed a simple model to describe transitions between aldehyde dehydrogenase (ALDH) positive CSCs and ALDH(-) bulk ovarian cancer cells. Microfluidics device-isolated single cell experiments demonstrated that ALDH+ cells were more proliferative than ALDH(-) cells. Based on our model we used ALDH+ and ALDH(-) cell division and proliferation properties to develop an empiric sampling algorithm and predict growth rate and CSC proportion for both ovarian cancer cell line and primary ovarian cancer cells, in-vitro and in-vivo. In both cell line and primary ovarian cancer cells, the algorithm predictions demonstrated a high correlation with observed ovarian cancer cell proliferation and CSC proportion. High correlation was maintained even in the presence of the EGF-like domain multiple 6 (EGFL6), a growth factor which changes ALDH+ cell asymmetric division rates and thereby tumor growth rates. Thus, based on sampling from the heterogeneity of in-vitro cell growth and division characteristics of a few hundred single cells, the simple algorithm described here provides rapid and inexpensive means to generate predictions that correlate with in-vivo tumor growth. Impact Journals LLC 2017-11-25 /pmc/articles/PMC5762314/ /pubmed/29340046 http://dx.doi.org/10.18632/oncotarget.22693 Text en Copyright: © 2017 Pearson et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Pearson, Alexander T. Ingram, Patrick Bai, Shoumei O'Hayer, Patrick Chung, Jaehoon Yoon, Euisik Jackson, Trachette Buckanovich, Ronald J. Sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo |
title | Sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo |
title_full | Sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo |
title_fullStr | Sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo |
title_full_unstemmed | Sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo |
title_short | Sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo |
title_sort | sampling from single-cell observations to predict tumor cell growth in-vitro and in-vivo |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5762314/ https://www.ncbi.nlm.nih.gov/pubmed/29340046 http://dx.doi.org/10.18632/oncotarget.22693 |
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