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Force Field Parametrization of Metal Ions from Statistical Learning Techniques

[Image: see text] A novel statistical procedure has been developed to optimize the parameters of nonbonded force fields of metal ions in soft matter. The criterion for the optimization is the minimization of the deviations from ab initio forces and energies calculated for model systems. The method e...

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Autores principales: Fracchia, Francesco, Del Frate, Gianluca, Mancini, Giordano, Rocchia, Walter, Barone, Vincenzo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2017
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763284/
https://www.ncbi.nlm.nih.gov/pubmed/29112432
http://dx.doi.org/10.1021/acs.jctc.7b00779
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author Fracchia, Francesco
Del Frate, Gianluca
Mancini, Giordano
Rocchia, Walter
Barone, Vincenzo
author_facet Fracchia, Francesco
Del Frate, Gianluca
Mancini, Giordano
Rocchia, Walter
Barone, Vincenzo
author_sort Fracchia, Francesco
collection PubMed
description [Image: see text] A novel statistical procedure has been developed to optimize the parameters of nonbonded force fields of metal ions in soft matter. The criterion for the optimization is the minimization of the deviations from ab initio forces and energies calculated for model systems. The method exploits the combination of the linear ridge regression and the cross-validation techniques with the differential evolution algorithm. Wide freedom in the choice of the functional form of the force fields is allowed since both linear and nonlinear parameters can be optimized. In order to maximize the information content of the data employed in the fitting procedure, the composition of the training set is entrusted to a combinatorial optimization algorithm which maximizes the dissimilarity of the included instances. The methodology has been validated using the force field parametrization of five metal ions (Zn(2+), Ni(2+), Mg(2+), Ca(2+), and Na(+)) in water as test cases.
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spelling pubmed-57632842018-01-14 Force Field Parametrization of Metal Ions from Statistical Learning Techniques Fracchia, Francesco Del Frate, Gianluca Mancini, Giordano Rocchia, Walter Barone, Vincenzo J Chem Theory Comput [Image: see text] A novel statistical procedure has been developed to optimize the parameters of nonbonded force fields of metal ions in soft matter. The criterion for the optimization is the minimization of the deviations from ab initio forces and energies calculated for model systems. The method exploits the combination of the linear ridge regression and the cross-validation techniques with the differential evolution algorithm. Wide freedom in the choice of the functional form of the force fields is allowed since both linear and nonlinear parameters can be optimized. In order to maximize the information content of the data employed in the fitting procedure, the composition of the training set is entrusted to a combinatorial optimization algorithm which maximizes the dissimilarity of the included instances. The methodology has been validated using the force field parametrization of five metal ions (Zn(2+), Ni(2+), Mg(2+), Ca(2+), and Na(+)) in water as test cases. American Chemical Society 2017-11-07 2018-01-09 /pmc/articles/PMC5763284/ /pubmed/29112432 http://dx.doi.org/10.1021/acs.jctc.7b00779 Text en Copyright © 2017 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Fracchia, Francesco
Del Frate, Gianluca
Mancini, Giordano
Rocchia, Walter
Barone, Vincenzo
Force Field Parametrization of Metal Ions from Statistical Learning Techniques
title Force Field Parametrization of Metal Ions from Statistical Learning Techniques
title_full Force Field Parametrization of Metal Ions from Statistical Learning Techniques
title_fullStr Force Field Parametrization of Metal Ions from Statistical Learning Techniques
title_full_unstemmed Force Field Parametrization of Metal Ions from Statistical Learning Techniques
title_short Force Field Parametrization of Metal Ions from Statistical Learning Techniques
title_sort force field parametrization of metal ions from statistical learning techniques
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763284/
https://www.ncbi.nlm.nih.gov/pubmed/29112432
http://dx.doi.org/10.1021/acs.jctc.7b00779
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