Cargando…

Integrating transcriptional activity in genome-scale models of metabolism

BACKGROUND: Genome-scale metabolic models provide an opportunity for rational approaches to studies of the different reactions taking place inside the cell. The integration of these models with gene regulatory networks is a hot topic in systems biology. The methods developed to date focus mostly on...

Descripción completa

Detalles Bibliográficos
Autores principales:	Banos, Daniel Trejo, Trébulle, Pauline, Elati, Mohamed
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763306/ https://www.ncbi.nlm.nih.gov/pubmed/29322933 http://dx.doi.org/10.1186/s12918-017-0507-0

Ejemplares similares

Inference and interrogation of a coregulatory network in the context of lipid accumulation in Yarrowia lipolytica
por: Trébulle, Pauline, et al.
Publicado: (2017)

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks
por: Jensen, Paul A, et al.
Publicado: (2011)

An Integrated Approach to Reconstructing Genome-Scale Transcriptional Regulatory Networks
por: Imam, Saheed, et al.
Publicado: (2015)

Latent network-based representations for large-scale gene expression data analysis
por: Dhifli, Wajdi, et al.
Publicado: (2019)

Analysis tools for the interplay between genome layout and regulation
por: Bouyioukos, Costas, et al.
Publicado: (2016)

Identification of functional modules based on transcriptional regulation structure
por: Birmelé, Etienne, et al.
Publicado: (2008)

Methods for integration of transcriptomic data in genome-scale metabolic models
por: Kim, Min Kyung, et al.
Publicado: (2014)

CoRegNet: reconstruction and integrated analysis of co-regulatory networks
por: Nicolle, Rémy, et al.
Publicado: (2015)

Closed-loop cycles of experiment design, execution, and learning accelerate systems biology model development in yeast
por: Coutant, Anthony, et al.
Publicado: (2019)

TCR industrial system integration strategy
por: Bartolomé, R, et al.
Publicado: (1999)

Integrated Genome-Scale Prediction of Detrimental Mutations in Transcription Networks
por: Francesconi, Mirko, et al.
Publicado: (2011)

Challenges in experimental data integration within genome-scale metabolic models
por: Bourguignon, Pierre-Yves, et al.
Publicado: (2010)

Data-driven integration of genome-scale regulatory and metabolic network models
por: Imam, Saheed, et al.
Publicado: (2015)

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks
por: Radrich, Karin, et al.
Publicado: (2010)

Le fonctionnement de la pompe à chaleur du foyer visiteurs pendant l'hiver 1984-1985
por: Lévrier, F, et al.
Publicado: (1985)

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
por: Yizhak, Keren, et al.
Publicado: (2010)

Integration of clinical data with a genome-scale metabolic model of the human adipocyte
por: Mardinoglu, Adil, et al.
Publicado: (2013)

A Model Integration Pipeline for the Improvement of Human Genome-Scale Metabolic Reconstructions
por: Vieira, Vítor, et al.
Publicado: (2018)

Next-Generation Genome-Scale Metabolic Modeling through Integration of Regulatory Mechanisms
por: Chung, Carolina H., et al.
Publicado: (2021)

Guided extraction of genome-scale metabolic models for the integration and analysis of omics data
por: Walakira, Andrew, et al.
Publicado: (2021)

GREAT: a web portal for Genome Regulatory Architecture Tools
por: Bouyioukos, Costas, et al.
Publicado: (2016)

Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism
por: Reuß, Daniel R., et al.
Publicado: (2017)

Metabolic Responses to Polymyxin Treatment in Acinetobacter baumannii ATCC 19606: Integrating Transcriptomics and Metabolomics with Genome-Scale Metabolic Modeling
por: Zhu, Yan, et al.
Publicado: (2019)

Integrative Genome-Scale Metabolic Modeling Reveals Versatile Metabolic Strategies for Methane Utilization in Methylomicrobium album BG8
por: Villada, Juan C., et al.
Publicado: (2022)

IMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models
por: Ye, Chao, et al.
Publicado: (2017)

Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models
por: Hadadi, Noushin, et al.
Publicado: (2020)

Comparison of metabolic states using genome-scale metabolic models
por: Sarathy, Chaitra, et al.
Publicado: (2021)

Integration of enzyme constraints in a genome-scale metabolic model of Aspergillus niger improves phenotype predictions
por: Zhou, Jingru, et al.
Publicado: (2021)

Integration of expression data in genome-scale metabolic network reconstructions
por: Blazier, Anna S., et al.
Publicado: (2012)

A Genome-Scale Metabolic Reconstruction of Phytophthora infestans With the Integration of Transcriptional Data Reveals the Key Metabolic Patterns Involved in the Interaction of Its Host
por: Botero, David, et al.
Publicado: (2018)

Integration of transcriptomic data in a genome-scale metabolic model to investigate the link between obesity and breast cancer
por: Granata, Ilaria, et al.
Publicado: (2019)

A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics
por: Oftadeh, Omid, et al.
Publicado: (2021)

Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models
por: Režen, Tadeja, et al.
Publicado: (2022)

Integrating Omics Data in Genome-Scale Metabolic Modeling: A Methodological Perspective for Precision Medicine
por: Sen, Partho, et al.
Publicado: (2023)

A curated genome-scale metabolic model of Bordetella pertussis metabolism
por: Fyson, Nick, et al.
Publicado: (2017)

Integrating gene expression data into a genome-scale metabolic model to identify reprogramming during adaptive evolution
por: Yazdanpanah, Shaghayegh, et al.
Publicado: (2023)

Addressing uncertainty in genome-scale metabolic model reconstruction and analysis
por: Bernstein, David B., et al.
Publicado: (2021)

The evolution of genome-scale models of cancer metabolism
por: Lewis, Nathan E., et al.
Publicado: (2013)

Reconstructing genome-scale metabolic models with merlin
por: Dias, Oscar, et al.
Publicado: (2015)

Modeling cancer metabolism on a genome scale
por: Yizhak, Keren, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_seafsdnanr7pbmsrm54fspb26r