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Features of asthma which provide meaningful insights for understanding the disease heterogeneity
BACKGROUND: Data‐driven methods such as hierarchical clustering (HC) and principal component analysis (PCA) have been used to identify asthma subtypes, with inconsistent results. OBJECTIVE: To develop a framework for the discovery of stable and clinically meaningful asthma subtypes. METHODS: We perf...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763358/ https://www.ncbi.nlm.nih.gov/pubmed/28833810 http://dx.doi.org/10.1111/cea.13014 |
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author | Deliu, M. Yavuz, T. S. Sperrin, M. Belgrave, D. Sahiner, U. M. Sackesen, C. Kalayci, O. Custovic, A. |
author_facet | Deliu, M. Yavuz, T. S. Sperrin, M. Belgrave, D. Sahiner, U. M. Sackesen, C. Kalayci, O. Custovic, A. |
author_sort | Deliu, M. |
collection | PubMed |
description | BACKGROUND: Data‐driven methods such as hierarchical clustering (HC) and principal component analysis (PCA) have been used to identify asthma subtypes, with inconsistent results. OBJECTIVE: To develop a framework for the discovery of stable and clinically meaningful asthma subtypes. METHODS: We performed HC in a rich data set from 613 asthmatic children, using 45 clinical variables (Model 1), and after PCA dimensionality reduction (Model 2). Clinical experts then identified a set of asthma features/domains which informed clusters in the two analyses. In Model 3, we reclustered the data using these features to ascertain whether this improved the discovery process. RESULTS: Cluster stability was poor in Models 1 and 2. Clinical experts highlighted four asthma features/domains which differentiated the clusters in two models: age of onset, allergic sensitization, severity, and recent exacerbations. In Model 3 (HC using these four features), cluster stability improved substantially. The cluster assignment changed, providing more clinically interpretable results. In a 5‐cluster model, we labelled the clusters as: “Difficult asthma” (n = 132); “Early‐onset mild atopic” (n = 210); “Early‐onset mild non‐atopic: (n = 153); “Late‐onset” (n = 105); and “Exacerbation‐prone asthma” (n = 13). Multinomial regression demonstrated that lung function was significantly diminished among children with “Difficult asthma”; blood eosinophilia was a significant feature of “Difficult,” “Early‐onset mild atopic,” and “Late‐onset asthma.” Children with moderate‐to‐severe asthma were present in each cluster. CONCLUSIONS AND CLINICAL RELEVANCE: An integrative approach of blending the data with clinical expert domain knowledge identified four features, which may be informative for ascertaining asthma endotypes. These findings suggest that variables which are key determinants of asthma presence, severity, or control may not be the most informative for determining asthma subtypes. Our results indicate that exacerbation‐prone asthma may be a separate asthma endotype and that severe asthma is not a single entity, but an extreme end of the spectrum of several different asthma endotypes. |
format | Online Article Text |
id | pubmed-5763358 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-57633582018-01-17 Features of asthma which provide meaningful insights for understanding the disease heterogeneity Deliu, M. Yavuz, T. S. Sperrin, M. Belgrave, D. Sahiner, U. M. Sackesen, C. Kalayci, O. Custovic, A. Clin Exp Allergy ORIGINAL ARTICLES BACKGROUND: Data‐driven methods such as hierarchical clustering (HC) and principal component analysis (PCA) have been used to identify asthma subtypes, with inconsistent results. OBJECTIVE: To develop a framework for the discovery of stable and clinically meaningful asthma subtypes. METHODS: We performed HC in a rich data set from 613 asthmatic children, using 45 clinical variables (Model 1), and after PCA dimensionality reduction (Model 2). Clinical experts then identified a set of asthma features/domains which informed clusters in the two analyses. In Model 3, we reclustered the data using these features to ascertain whether this improved the discovery process. RESULTS: Cluster stability was poor in Models 1 and 2. Clinical experts highlighted four asthma features/domains which differentiated the clusters in two models: age of onset, allergic sensitization, severity, and recent exacerbations. In Model 3 (HC using these four features), cluster stability improved substantially. The cluster assignment changed, providing more clinically interpretable results. In a 5‐cluster model, we labelled the clusters as: “Difficult asthma” (n = 132); “Early‐onset mild atopic” (n = 210); “Early‐onset mild non‐atopic: (n = 153); “Late‐onset” (n = 105); and “Exacerbation‐prone asthma” (n = 13). Multinomial regression demonstrated that lung function was significantly diminished among children with “Difficult asthma”; blood eosinophilia was a significant feature of “Difficult,” “Early‐onset mild atopic,” and “Late‐onset asthma.” Children with moderate‐to‐severe asthma were present in each cluster. CONCLUSIONS AND CLINICAL RELEVANCE: An integrative approach of blending the data with clinical expert domain knowledge identified four features, which may be informative for ascertaining asthma endotypes. These findings suggest that variables which are key determinants of asthma presence, severity, or control may not be the most informative for determining asthma subtypes. Our results indicate that exacerbation‐prone asthma may be a separate asthma endotype and that severe asthma is not a single entity, but an extreme end of the spectrum of several different asthma endotypes. John Wiley and Sons Inc. 2017-09-15 2018-01 /pmc/articles/PMC5763358/ /pubmed/28833810 http://dx.doi.org/10.1111/cea.13014 Text en © 2017 The Authors. Clinical & Experimental Allergy published by John Wiley & Sons Ltd This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | ORIGINAL ARTICLES Deliu, M. Yavuz, T. S. Sperrin, M. Belgrave, D. Sahiner, U. M. Sackesen, C. Kalayci, O. Custovic, A. Features of asthma which provide meaningful insights for understanding the disease heterogeneity |
title | Features of asthma which provide meaningful insights for understanding the disease heterogeneity |
title_full | Features of asthma which provide meaningful insights for understanding the disease heterogeneity |
title_fullStr | Features of asthma which provide meaningful insights for understanding the disease heterogeneity |
title_full_unstemmed | Features of asthma which provide meaningful insights for understanding the disease heterogeneity |
title_short | Features of asthma which provide meaningful insights for understanding the disease heterogeneity |
title_sort | features of asthma which provide meaningful insights for understanding the disease heterogeneity |
topic | ORIGINAL ARTICLES |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763358/ https://www.ncbi.nlm.nih.gov/pubmed/28833810 http://dx.doi.org/10.1111/cea.13014 |
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