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Regeneration in distantly related species: common strategies and pathways
While almost all animals are able to at least partially replace some lost parts, regeneration abilities vary considerably across species. Here we study gene expression patterns in distantly related species to investigate conserved regeneration strategies. To this end, we collect from the literature...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5764997/ https://www.ncbi.nlm.nih.gov/pubmed/29354283 http://dx.doi.org/10.1038/s41540-017-0042-z |
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author | Fumagalli, Maria Rita Zapperi, Stefano La Porta, Caterina A. M. |
author_facet | Fumagalli, Maria Rita Zapperi, Stefano La Porta, Caterina A. M. |
author_sort | Fumagalli, Maria Rita |
collection | PubMed |
description | While almost all animals are able to at least partially replace some lost parts, regeneration abilities vary considerably across species. Here we study gene expression patterns in distantly related species to investigate conserved regeneration strategies. To this end, we collect from the literature transcriptomic data obtained during the regeneration of three species (Hydra magnipapillata, Schmidtea mediterranea, and Apostichopus japonicus), and compare them with gene expression during regeneration in vertebrates and mammals. This allows us to identify a common set of differentially expressed genes and relevant shared pathways that are conserved across species during the early stage of the regeneration process. We also find a set of differentially expressed genes that in mammals are associated to the presence of macrophages and to the epithelial–mesenchymal transition. This suggests that features of the sophisticated wound healing strategy of mammals are already observable in earlier emerging metazoans. |
format | Online Article Text |
id | pubmed-5764997 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57649972018-01-19 Regeneration in distantly related species: common strategies and pathways Fumagalli, Maria Rita Zapperi, Stefano La Porta, Caterina A. M. NPJ Syst Biol Appl Article While almost all animals are able to at least partially replace some lost parts, regeneration abilities vary considerably across species. Here we study gene expression patterns in distantly related species to investigate conserved regeneration strategies. To this end, we collect from the literature transcriptomic data obtained during the regeneration of three species (Hydra magnipapillata, Schmidtea mediterranea, and Apostichopus japonicus), and compare them with gene expression during regeneration in vertebrates and mammals. This allows us to identify a common set of differentially expressed genes and relevant shared pathways that are conserved across species during the early stage of the regeneration process. We also find a set of differentially expressed genes that in mammals are associated to the presence of macrophages and to the epithelial–mesenchymal transition. This suggests that features of the sophisticated wound healing strategy of mammals are already observable in earlier emerging metazoans. Nature Publishing Group UK 2018-01-11 /pmc/articles/PMC5764997/ /pubmed/29354283 http://dx.doi.org/10.1038/s41540-017-0042-z Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Fumagalli, Maria Rita Zapperi, Stefano La Porta, Caterina A. M. Regeneration in distantly related species: common strategies and pathways |
title | Regeneration in distantly related species: common strategies and pathways |
title_full | Regeneration in distantly related species: common strategies and pathways |
title_fullStr | Regeneration in distantly related species: common strategies and pathways |
title_full_unstemmed | Regeneration in distantly related species: common strategies and pathways |
title_short | Regeneration in distantly related species: common strategies and pathways |
title_sort | regeneration in distantly related species: common strategies and pathways |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5764997/ https://www.ncbi.nlm.nih.gov/pubmed/29354283 http://dx.doi.org/10.1038/s41540-017-0042-z |
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