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Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer
Streptomyces hyaluromycini MB-PO13(T) (=NBRC 110483(T) = DSM 100105(T)) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of th...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765640/ https://www.ncbi.nlm.nih.gov/pubmed/29371910 http://dx.doi.org/10.1186/s40793-017-0286-7 |
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author | Harunari, Enjuro Komaki, Hisayuki Ichikawa, Natsuko Hosoyama, Akira Kimura, Akane Hamada, Moriyuki Igarashi, Yasuhiro |
author_facet | Harunari, Enjuro Komaki, Hisayuki Ichikawa, Natsuko Hosoyama, Akira Kimura, Akane Hamada, Moriyuki Igarashi, Yasuhiro |
author_sort | Harunari, Enjuro |
collection | PubMed |
description | Streptomyces hyaluromycini MB-PO13(T) (=NBRC 110483(T) = DSM 100105(T)) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11.5 Mb genome of Streptomyces hyaluromycini MB-PO13(T) encoded 10,098 putative ORFs, of which 5317 were assigned with COG categories. The genome harbored at least six type I PKS clusters, three type II PKS gene clusters, two type III PKS gene clusters, six NRPS gene clusters, and one hybrid PKS/NRPS gene cluster. The type II PKS gene cluster including 2-amino-3-hydroxycyclopent-2-enone synthetic genes was identified to be responsible for hyaluromycin synthesis. We propose the biosynthetic pathway based on bioinformatic analysis. |
format | Online Article Text |
id | pubmed-5765640 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57656402018-01-25 Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer Harunari, Enjuro Komaki, Hisayuki Ichikawa, Natsuko Hosoyama, Akira Kimura, Akane Hamada, Moriyuki Igarashi, Yasuhiro Stand Genomic Sci Short Genome Report Streptomyces hyaluromycini MB-PO13(T) (=NBRC 110483(T) = DSM 100105(T)) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11.5 Mb genome of Streptomyces hyaluromycini MB-PO13(T) encoded 10,098 putative ORFs, of which 5317 were assigned with COG categories. The genome harbored at least six type I PKS clusters, three type II PKS gene clusters, two type III PKS gene clusters, six NRPS gene clusters, and one hybrid PKS/NRPS gene cluster. The type II PKS gene cluster including 2-amino-3-hydroxycyclopent-2-enone synthetic genes was identified to be responsible for hyaluromycin synthesis. We propose the biosynthetic pathway based on bioinformatic analysis. BioMed Central 2018-01-11 /pmc/articles/PMC5765640/ /pubmed/29371910 http://dx.doi.org/10.1186/s40793-017-0286-7 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Harunari, Enjuro Komaki, Hisayuki Ichikawa, Natsuko Hosoyama, Akira Kimura, Akane Hamada, Moriyuki Igarashi, Yasuhiro Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer |
title | Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer |
title_full | Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer |
title_fullStr | Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer |
title_full_unstemmed | Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer |
title_short | Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer |
title_sort | draft genome sequence of streptomyces hyaluromycini mb-po13(t), a hyaluromycin producer |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765640/ https://www.ncbi.nlm.nih.gov/pubmed/29371910 http://dx.doi.org/10.1186/s40793-017-0286-7 |
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