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Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer

Streptomyces hyaluromycini MB-PO13(T) (=NBRC 110483(T) = DSM 100105(T)) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of th...

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Autores principales: Harunari, Enjuro, Komaki, Hisayuki, Ichikawa, Natsuko, Hosoyama, Akira, Kimura, Akane, Hamada, Moriyuki, Igarashi, Yasuhiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765640/
https://www.ncbi.nlm.nih.gov/pubmed/29371910
http://dx.doi.org/10.1186/s40793-017-0286-7
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author Harunari, Enjuro
Komaki, Hisayuki
Ichikawa, Natsuko
Hosoyama, Akira
Kimura, Akane
Hamada, Moriyuki
Igarashi, Yasuhiro
author_facet Harunari, Enjuro
Komaki, Hisayuki
Ichikawa, Natsuko
Hosoyama, Akira
Kimura, Akane
Hamada, Moriyuki
Igarashi, Yasuhiro
author_sort Harunari, Enjuro
collection PubMed
description Streptomyces hyaluromycini MB-PO13(T) (=NBRC 110483(T) = DSM 100105(T)) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11.5 Mb genome of Streptomyces hyaluromycini MB-PO13(T) encoded 10,098 putative ORFs, of which 5317 were assigned with COG categories. The genome harbored at least six type I PKS clusters, three type II PKS gene clusters, two type III PKS gene clusters, six NRPS gene clusters, and one hybrid PKS/NRPS gene cluster. The type II PKS gene cluster including 2-amino-3-hydroxycyclopent-2-enone synthetic genes was identified to be responsible for hyaluromycin synthesis. We propose the biosynthetic pathway based on bioinformatic analysis.
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spelling pubmed-57656402018-01-25 Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer Harunari, Enjuro Komaki, Hisayuki Ichikawa, Natsuko Hosoyama, Akira Kimura, Akane Hamada, Moriyuki Igarashi, Yasuhiro Stand Genomic Sci Short Genome Report Streptomyces hyaluromycini MB-PO13(T) (=NBRC 110483(T) = DSM 100105(T)) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11.5 Mb genome of Streptomyces hyaluromycini MB-PO13(T) encoded 10,098 putative ORFs, of which 5317 were assigned with COG categories. The genome harbored at least six type I PKS clusters, three type II PKS gene clusters, two type III PKS gene clusters, six NRPS gene clusters, and one hybrid PKS/NRPS gene cluster. The type II PKS gene cluster including 2-amino-3-hydroxycyclopent-2-enone synthetic genes was identified to be responsible for hyaluromycin synthesis. We propose the biosynthetic pathway based on bioinformatic analysis. BioMed Central 2018-01-11 /pmc/articles/PMC5765640/ /pubmed/29371910 http://dx.doi.org/10.1186/s40793-017-0286-7 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Harunari, Enjuro
Komaki, Hisayuki
Ichikawa, Natsuko
Hosoyama, Akira
Kimura, Akane
Hamada, Moriyuki
Igarashi, Yasuhiro
Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer
title Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer
title_full Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer
title_fullStr Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer
title_full_unstemmed Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer
title_short Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer
title_sort draft genome sequence of streptomyces hyaluromycini mb-po13(t), a hyaluromycin producer
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765640/
https://www.ncbi.nlm.nih.gov/pubmed/29371910
http://dx.doi.org/10.1186/s40793-017-0286-7
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