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Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows
Is it possible to recover the position of a source from the steady-state fluxes of Brownian particles to small absorbing windows located on the boundary of a domain? To address this question, we develop a numerical procedure to avoid tracking Brownian trajectories in the entire infinite space. Inste...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Academic Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765848/ https://www.ncbi.nlm.nih.gov/pubmed/29456262 http://dx.doi.org/10.1016/j.jcp.2017.10.058 |
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author | Dobramysl, U. Holcman, D. |
author_facet | Dobramysl, U. Holcman, D. |
author_sort | Dobramysl, U. |
collection | PubMed |
description | Is it possible to recover the position of a source from the steady-state fluxes of Brownian particles to small absorbing windows located on the boundary of a domain? To address this question, we develop a numerical procedure to avoid tracking Brownian trajectories in the entire infinite space. Instead, we generate particles near the absorbing windows, computed from the analytical expression of the exit probability. When the Brownian particles are generated by a steady-state gradient at a single point, we compute asymptotically the fluxes to small absorbing holes distributed on the boundary of half-space and on a disk in two dimensions, which agree with stochastic simulations. We also derive an expression for the splitting probability between small windows using the matched asymptotic method. Finally, when there are more than two small absorbing windows, we show how to reconstruct the position of the source from the diffusion fluxes. The present approach provides a computational first principle for the mechanism of sensing a gradient of diffusing particles, a ubiquitous problem in cell biology. |
format | Online Article Text |
id | pubmed-5765848 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Academic Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57658482018-02-15 Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows Dobramysl, U. Holcman, D. J Comput Phys Article Is it possible to recover the position of a source from the steady-state fluxes of Brownian particles to small absorbing windows located on the boundary of a domain? To address this question, we develop a numerical procedure to avoid tracking Brownian trajectories in the entire infinite space. Instead, we generate particles near the absorbing windows, computed from the analytical expression of the exit probability. When the Brownian particles are generated by a steady-state gradient at a single point, we compute asymptotically the fluxes to small absorbing holes distributed on the boundary of half-space and on a disk in two dimensions, which agree with stochastic simulations. We also derive an expression for the splitting probability between small windows using the matched asymptotic method. Finally, when there are more than two small absorbing windows, we show how to reconstruct the position of the source from the diffusion fluxes. The present approach provides a computational first principle for the mechanism of sensing a gradient of diffusing particles, a ubiquitous problem in cell biology. Academic Press 2018-02-15 /pmc/articles/PMC5765848/ /pubmed/29456262 http://dx.doi.org/10.1016/j.jcp.2017.10.058 Text en © 2017 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Dobramysl, U. Holcman, D. Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows |
title | Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows |
title_full | Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows |
title_fullStr | Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows |
title_full_unstemmed | Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows |
title_short | Mixed analytical-stochastic simulation method for the recovery of a Brownian gradient source from probability fluxes to small windows |
title_sort | mixed analytical-stochastic simulation method for the recovery of a brownian gradient source from probability fluxes to small windows |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765848/ https://www.ncbi.nlm.nih.gov/pubmed/29456262 http://dx.doi.org/10.1016/j.jcp.2017.10.058 |
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