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Ensemble learning method for the prediction of new bioactive molecules
Pharmacologically active molecules can provide remedies for a range of different illnesses and infections. Therefore, the search for such bioactive molecules has been an enduring mission. As such, there is a need to employ a more suitable, reliable, and robust classification method for enhancing the...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5766097/ https://www.ncbi.nlm.nih.gov/pubmed/29329334 http://dx.doi.org/10.1371/journal.pone.0189538 |
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author | Afolabi, Lateefat Temitope Saeed, Faisal Hashim, Haslinda Petinrin, Olutomilayo Olayemi |
author_facet | Afolabi, Lateefat Temitope Saeed, Faisal Hashim, Haslinda Petinrin, Olutomilayo Olayemi |
author_sort | Afolabi, Lateefat Temitope |
collection | PubMed |
description | Pharmacologically active molecules can provide remedies for a range of different illnesses and infections. Therefore, the search for such bioactive molecules has been an enduring mission. As such, there is a need to employ a more suitable, reliable, and robust classification method for enhancing the prediction of the existence of new bioactive molecules. In this paper, we adopt a recently developed combination of different boosting methods (Adaboost) for the prediction of new bioactive molecules. We conducted the research experiments utilizing the widely used MDL Drug Data Report (MDDR) database. The proposed boosting method generated better results than other machine learning methods. This finding suggests that the method is suitable for inclusion among the in silico tools for use in cheminformatics, computational chemistry and molecular biology. |
format | Online Article Text |
id | pubmed-5766097 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-57660972018-01-23 Ensemble learning method for the prediction of new bioactive molecules Afolabi, Lateefat Temitope Saeed, Faisal Hashim, Haslinda Petinrin, Olutomilayo Olayemi PLoS One Research Article Pharmacologically active molecules can provide remedies for a range of different illnesses and infections. Therefore, the search for such bioactive molecules has been an enduring mission. As such, there is a need to employ a more suitable, reliable, and robust classification method for enhancing the prediction of the existence of new bioactive molecules. In this paper, we adopt a recently developed combination of different boosting methods (Adaboost) for the prediction of new bioactive molecules. We conducted the research experiments utilizing the widely used MDL Drug Data Report (MDDR) database. The proposed boosting method generated better results than other machine learning methods. This finding suggests that the method is suitable for inclusion among the in silico tools for use in cheminformatics, computational chemistry and molecular biology. Public Library of Science 2018-01-12 /pmc/articles/PMC5766097/ /pubmed/29329334 http://dx.doi.org/10.1371/journal.pone.0189538 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication. |
spellingShingle | Research Article Afolabi, Lateefat Temitope Saeed, Faisal Hashim, Haslinda Petinrin, Olutomilayo Olayemi Ensemble learning method for the prediction of new bioactive molecules |
title | Ensemble learning method for the prediction of new bioactive molecules |
title_full | Ensemble learning method for the prediction of new bioactive molecules |
title_fullStr | Ensemble learning method for the prediction of new bioactive molecules |
title_full_unstemmed | Ensemble learning method for the prediction of new bioactive molecules |
title_short | Ensemble learning method for the prediction of new bioactive molecules |
title_sort | ensemble learning method for the prediction of new bioactive molecules |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5766097/ https://www.ncbi.nlm.nih.gov/pubmed/29329334 http://dx.doi.org/10.1371/journal.pone.0189538 |
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