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Nicotiana glauca whole-genome investigation for cT-DNA study
OBJECTIVE: Nicotiana glauca (tree tobacco) is a naturally transgenic plant, containing sequences acquired from Agrobacterium rhizogenes by horizontal gene transfer. Besides, N. glauca contains a wide profile of alkaloids of medical interest. DATA DESCRIPTION: We report a high-depth sequencing and de...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5766994/ https://www.ncbi.nlm.nih.gov/pubmed/29329601 http://dx.doi.org/10.1186/s13104-018-3127-x |
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author | Khafizova, Galina Dobrynin, Pavel Polev, Dmitrii Matveeva, Tatiana |
author_facet | Khafizova, Galina Dobrynin, Pavel Polev, Dmitrii Matveeva, Tatiana |
author_sort | Khafizova, Galina |
collection | PubMed |
description | OBJECTIVE: Nicotiana glauca (tree tobacco) is a naturally transgenic plant, containing sequences acquired from Agrobacterium rhizogenes by horizontal gene transfer. Besides, N. glauca contains a wide profile of alkaloids of medical interest. DATA DESCRIPTION: We report a high-depth sequencing and de novo assembly of N. glauca full genome and analysis of genome elements with bacterial origin. The draft genome assembly is 3.2 Gb, with N50 size of 31.1 kbp. Comparative analysis confirmed the presence of single, previously described gT insertion. No evidence was acquired to support idea of multiple T-DNA insertions in the N. glauca genome. Our data is the first comprehensive de novo assembly of tree tobacco and provide valuable information for researches in pharmacological and in phylogenetic fields. |
format | Online Article Text |
id | pubmed-5766994 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57669942018-01-17 Nicotiana glauca whole-genome investigation for cT-DNA study Khafizova, Galina Dobrynin, Pavel Polev, Dmitrii Matveeva, Tatiana BMC Res Notes Data Note OBJECTIVE: Nicotiana glauca (tree tobacco) is a naturally transgenic plant, containing sequences acquired from Agrobacterium rhizogenes by horizontal gene transfer. Besides, N. glauca contains a wide profile of alkaloids of medical interest. DATA DESCRIPTION: We report a high-depth sequencing and de novo assembly of N. glauca full genome and analysis of genome elements with bacterial origin. The draft genome assembly is 3.2 Gb, with N50 size of 31.1 kbp. Comparative analysis confirmed the presence of single, previously described gT insertion. No evidence was acquired to support idea of multiple T-DNA insertions in the N. glauca genome. Our data is the first comprehensive de novo assembly of tree tobacco and provide valuable information for researches in pharmacological and in phylogenetic fields. BioMed Central 2018-01-12 /pmc/articles/PMC5766994/ /pubmed/29329601 http://dx.doi.org/10.1186/s13104-018-3127-x Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Data Note Khafizova, Galina Dobrynin, Pavel Polev, Dmitrii Matveeva, Tatiana Nicotiana glauca whole-genome investigation for cT-DNA study |
title | Nicotiana glauca whole-genome investigation for cT-DNA study |
title_full | Nicotiana glauca whole-genome investigation for cT-DNA study |
title_fullStr | Nicotiana glauca whole-genome investigation for cT-DNA study |
title_full_unstemmed | Nicotiana glauca whole-genome investigation for cT-DNA study |
title_short | Nicotiana glauca whole-genome investigation for cT-DNA study |
title_sort | nicotiana glauca whole-genome investigation for ct-dna study |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5766994/ https://www.ncbi.nlm.nih.gov/pubmed/29329601 http://dx.doi.org/10.1186/s13104-018-3127-x |
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