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Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States
The draft genome of Xylaria sp. isolate MSU_SB201401, causal agent of taproot decline of soybean in the southern U.S., is presented here. The genome assembly was 56.7 Mb in size with an L50 of 246. A total of 10,880 putative protein-encoding genes were predicted, including 647 genes encoding carbohy...
| Autores principales: | , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Elsevier
2018
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5767910/ https://www.ncbi.nlm.nih.gov/pubmed/29349107 http://dx.doi.org/10.1016/j.dib.2017.12.060 |
| _version_ | 1783292613254709248 |
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| author | Sharma, Sandeep Zaccaron, Alex Z. Ridenour, John B. Allen, Tom W. Conner, Kassie Doyle, Vinson P. Price, Trey Sikora, Edward Singh, Raghuwinder Spurlock, Terry Tomaso-Peterson, Maria Wilkerson, Tessie Bluhm, Burton H. |
| author_facet | Sharma, Sandeep Zaccaron, Alex Z. Ridenour, John B. Allen, Tom W. Conner, Kassie Doyle, Vinson P. Price, Trey Sikora, Edward Singh, Raghuwinder Spurlock, Terry Tomaso-Peterson, Maria Wilkerson, Tessie Bluhm, Burton H. |
| author_sort | Sharma, Sandeep |
| collection | PubMed |
| description | The draft genome of Xylaria sp. isolate MSU_SB201401, causal agent of taproot decline of soybean in the southern U.S., is presented here. The genome assembly was 56.7 Mb in size with an L50 of 246. A total of 10,880 putative protein-encoding genes were predicted, including 647 genes encoding carbohydrate-active enzymes and 1053 genes encoding secreted proteins. This is the first draft genome of a plant-pathogenic Xylaria sp. associated with soybean. The draft genome of Xylaria sp. isolate MSU_SB201401 will provide an important resource for future experiments to determine the molecular basis of pathogenesis. |
| format | Online Article Text |
| id | pubmed-5767910 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2018 |
| publisher | Elsevier |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-57679102018-01-18 Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States Sharma, Sandeep Zaccaron, Alex Z. Ridenour, John B. Allen, Tom W. Conner, Kassie Doyle, Vinson P. Price, Trey Sikora, Edward Singh, Raghuwinder Spurlock, Terry Tomaso-Peterson, Maria Wilkerson, Tessie Bluhm, Burton H. Data Brief Agricultural and Biological Science The draft genome of Xylaria sp. isolate MSU_SB201401, causal agent of taproot decline of soybean in the southern U.S., is presented here. The genome assembly was 56.7 Mb in size with an L50 of 246. A total of 10,880 putative protein-encoding genes were predicted, including 647 genes encoding carbohydrate-active enzymes and 1053 genes encoding secreted proteins. This is the first draft genome of a plant-pathogenic Xylaria sp. associated with soybean. The draft genome of Xylaria sp. isolate MSU_SB201401 will provide an important resource for future experiments to determine the molecular basis of pathogenesis. Elsevier 2018-01-03 /pmc/articles/PMC5767910/ /pubmed/29349107 http://dx.doi.org/10.1016/j.dib.2017.12.060 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
| spellingShingle | Agricultural and Biological Science Sharma, Sandeep Zaccaron, Alex Z. Ridenour, John B. Allen, Tom W. Conner, Kassie Doyle, Vinson P. Price, Trey Sikora, Edward Singh, Raghuwinder Spurlock, Terry Tomaso-Peterson, Maria Wilkerson, Tessie Bluhm, Burton H. Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States |
| title | Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States |
| title_full | Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States |
| title_fullStr | Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States |
| title_full_unstemmed | Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States |
| title_short | Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States |
| title_sort | draft genome sequence of xylaria sp., the causal agent of taproot decline of soybean in the southern united states |
| topic | Agricultural and Biological Science |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5767910/ https://www.ncbi.nlm.nih.gov/pubmed/29349107 http://dx.doi.org/10.1016/j.dib.2017.12.060 |
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