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Recent Developments and Applications of the MMPBSA Method

The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been widely applied as an efficient and reliable free energy simulation method to model molecular recognition, such as for protein-ligand binding interactions. In this review, we focus on recent developments and application...

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Autores principales: Wang, Changhao, Greene, D'Artagnan, Xiao, Li, Qi, Ruxi, Luo, Ray
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5768160/
https://www.ncbi.nlm.nih.gov/pubmed/29367919
http://dx.doi.org/10.3389/fmolb.2017.00087
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author Wang, Changhao
Greene, D'Artagnan
Xiao, Li
Qi, Ruxi
Luo, Ray
author_facet Wang, Changhao
Greene, D'Artagnan
Xiao, Li
Qi, Ruxi
Luo, Ray
author_sort Wang, Changhao
collection PubMed
description The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been widely applied as an efficient and reliable free energy simulation method to model molecular recognition, such as for protein-ligand binding interactions. In this review, we focus on recent developments and applications of the MMPBSA method. The methodology review covers solvation terms, the entropy term, extensions to membrane proteins and high-speed screening, and new automation toolkits. Recent applications in various important biomedical and chemical fields are also reviewed. We conclude with a few future directions aimed at making MMPBSA a more robust and efficient method.
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spelling pubmed-57681602018-01-24 Recent Developments and Applications of the MMPBSA Method Wang, Changhao Greene, D'Artagnan Xiao, Li Qi, Ruxi Luo, Ray Front Mol Biosci Molecular Biosciences The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been widely applied as an efficient and reliable free energy simulation method to model molecular recognition, such as for protein-ligand binding interactions. In this review, we focus on recent developments and applications of the MMPBSA method. The methodology review covers solvation terms, the entropy term, extensions to membrane proteins and high-speed screening, and new automation toolkits. Recent applications in various important biomedical and chemical fields are also reviewed. We conclude with a few future directions aimed at making MMPBSA a more robust and efficient method. Frontiers Media S.A. 2018-01-10 /pmc/articles/PMC5768160/ /pubmed/29367919 http://dx.doi.org/10.3389/fmolb.2017.00087 Text en Copyright © 2018 Wang, Greene, Xiao, Qi and Luo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Wang, Changhao
Greene, D'Artagnan
Xiao, Li
Qi, Ruxi
Luo, Ray
Recent Developments and Applications of the MMPBSA Method
title Recent Developments and Applications of the MMPBSA Method
title_full Recent Developments and Applications of the MMPBSA Method
title_fullStr Recent Developments and Applications of the MMPBSA Method
title_full_unstemmed Recent Developments and Applications of the MMPBSA Method
title_short Recent Developments and Applications of the MMPBSA Method
title_sort recent developments and applications of the mmpbsa method
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5768160/
https://www.ncbi.nlm.nih.gov/pubmed/29367919
http://dx.doi.org/10.3389/fmolb.2017.00087
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