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Recent Developments and Applications of the MMPBSA Method
The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been widely applied as an efficient and reliable free energy simulation method to model molecular recognition, such as for protein-ligand binding interactions. In this review, we focus on recent developments and application...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5768160/ https://www.ncbi.nlm.nih.gov/pubmed/29367919 http://dx.doi.org/10.3389/fmolb.2017.00087 |
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author | Wang, Changhao Greene, D'Artagnan Xiao, Li Qi, Ruxi Luo, Ray |
author_facet | Wang, Changhao Greene, D'Artagnan Xiao, Li Qi, Ruxi Luo, Ray |
author_sort | Wang, Changhao |
collection | PubMed |
description | The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been widely applied as an efficient and reliable free energy simulation method to model molecular recognition, such as for protein-ligand binding interactions. In this review, we focus on recent developments and applications of the MMPBSA method. The methodology review covers solvation terms, the entropy term, extensions to membrane proteins and high-speed screening, and new automation toolkits. Recent applications in various important biomedical and chemical fields are also reviewed. We conclude with a few future directions aimed at making MMPBSA a more robust and efficient method. |
format | Online Article Text |
id | pubmed-5768160 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-57681602018-01-24 Recent Developments and Applications of the MMPBSA Method Wang, Changhao Greene, D'Artagnan Xiao, Li Qi, Ruxi Luo, Ray Front Mol Biosci Molecular Biosciences The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been widely applied as an efficient and reliable free energy simulation method to model molecular recognition, such as for protein-ligand binding interactions. In this review, we focus on recent developments and applications of the MMPBSA method. The methodology review covers solvation terms, the entropy term, extensions to membrane proteins and high-speed screening, and new automation toolkits. Recent applications in various important biomedical and chemical fields are also reviewed. We conclude with a few future directions aimed at making MMPBSA a more robust and efficient method. Frontiers Media S.A. 2018-01-10 /pmc/articles/PMC5768160/ /pubmed/29367919 http://dx.doi.org/10.3389/fmolb.2017.00087 Text en Copyright © 2018 Wang, Greene, Xiao, Qi and Luo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Wang, Changhao Greene, D'Artagnan Xiao, Li Qi, Ruxi Luo, Ray Recent Developments and Applications of the MMPBSA Method |
title | Recent Developments and Applications of the MMPBSA Method |
title_full | Recent Developments and Applications of the MMPBSA Method |
title_fullStr | Recent Developments and Applications of the MMPBSA Method |
title_full_unstemmed | Recent Developments and Applications of the MMPBSA Method |
title_short | Recent Developments and Applications of the MMPBSA Method |
title_sort | recent developments and applications of the mmpbsa method |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5768160/ https://www.ncbi.nlm.nih.gov/pubmed/29367919 http://dx.doi.org/10.3389/fmolb.2017.00087 |
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