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mORCA: ubiquitous access to life science web services

BACKGROUND: Technical advances in mobile devices such as smartphones and tablets have produced an extraordinary increase in their use around the world and have become part of our daily lives. The possibility of carrying these devices in a pocket, particularly mobile phones, has enabled ubiquitous ac...

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Detalles Bibliográficos
Autores principales: Diaz-del-Pino, Sergio, Trelles, Oswaldo, Falgueras, Juan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5771032/
https://www.ncbi.nlm.nih.gov/pubmed/29338691
http://dx.doi.org/10.1186/s12864-018-4439-x
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author Diaz-del-Pino, Sergio
Trelles, Oswaldo
Falgueras, Juan
author_facet Diaz-del-Pino, Sergio
Trelles, Oswaldo
Falgueras, Juan
author_sort Diaz-del-Pino, Sergio
collection PubMed
description BACKGROUND: Technical advances in mobile devices such as smartphones and tablets have produced an extraordinary increase in their use around the world and have become part of our daily lives. The possibility of carrying these devices in a pocket, particularly mobile phones, has enabled ubiquitous access to Internet resources. Furthermore, in the life sciences world there has been a vast proliferation of data types and services that finish as Web Services. This suggests the need for research into mobile clients to deal with life sciences applications for effective usage and exploitation. RESULTS: Analysing the current features in existing bioinformatics applications managing Web Services, we have devised, implemented, and deployed an easy-to-use web-based lightweight mobile client. This client is able to browse, select, compose parameters, invoke, and monitor the execution of Web Services stored in catalogues or central repositories. The client is also able to deal with huge amounts of data between external storage mounts. In addition, we also present a validation use case, which illustrates the usage of the application while executing, monitoring, and exploring the results of a registered workflow. The software its available in the Apple Store and Android Market and the source code is publicly available in Github. CONCLUSIONS: Mobile devices are becoming increasingly important in the scientific world due to their strong potential impact on scientific applications. Bioinformatics should not fall behind this trend. We present an original software client that deals with the intrinsic limitations of such devices and propose different guidelines to provide location-independent access to computational resources in bioinformatics and biomedicine. Its modular design makes it easily expandable with the inclusion of new repositories, tools, types of visualization, etc. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-018-4439-x) contains supplementary material, which is available to authorized users.
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spelling pubmed-57710322018-01-25 mORCA: ubiquitous access to life science web services Diaz-del-Pino, Sergio Trelles, Oswaldo Falgueras, Juan BMC Genomics Software BACKGROUND: Technical advances in mobile devices such as smartphones and tablets have produced an extraordinary increase in their use around the world and have become part of our daily lives. The possibility of carrying these devices in a pocket, particularly mobile phones, has enabled ubiquitous access to Internet resources. Furthermore, in the life sciences world there has been a vast proliferation of data types and services that finish as Web Services. This suggests the need for research into mobile clients to deal with life sciences applications for effective usage and exploitation. RESULTS: Analysing the current features in existing bioinformatics applications managing Web Services, we have devised, implemented, and deployed an easy-to-use web-based lightweight mobile client. This client is able to browse, select, compose parameters, invoke, and monitor the execution of Web Services stored in catalogues or central repositories. The client is also able to deal with huge amounts of data between external storage mounts. In addition, we also present a validation use case, which illustrates the usage of the application while executing, monitoring, and exploring the results of a registered workflow. The software its available in the Apple Store and Android Market and the source code is publicly available in Github. CONCLUSIONS: Mobile devices are becoming increasingly important in the scientific world due to their strong potential impact on scientific applications. Bioinformatics should not fall behind this trend. We present an original software client that deals with the intrinsic limitations of such devices and propose different guidelines to provide location-independent access to computational resources in bioinformatics and biomedicine. Its modular design makes it easily expandable with the inclusion of new repositories, tools, types of visualization, etc. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-018-4439-x) contains supplementary material, which is available to authorized users. BioMed Central 2018-01-16 /pmc/articles/PMC5771032/ /pubmed/29338691 http://dx.doi.org/10.1186/s12864-018-4439-x Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Diaz-del-Pino, Sergio
Trelles, Oswaldo
Falgueras, Juan
mORCA: ubiquitous access to life science web services
title mORCA: ubiquitous access to life science web services
title_full mORCA: ubiquitous access to life science web services
title_fullStr mORCA: ubiquitous access to life science web services
title_full_unstemmed mORCA: ubiquitous access to life science web services
title_short mORCA: ubiquitous access to life science web services
title_sort morca: ubiquitous access to life science web services
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5771032/
https://www.ncbi.nlm.nih.gov/pubmed/29338691
http://dx.doi.org/10.1186/s12864-018-4439-x
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