Cargando…

Exploring the Link between Nucleosome Occupancy and DNA Methylation

Near promoters, both nucleosomes and CpG sites form characteristic spatial patterns. Previously, nucleosome depleted regions were observed upstream of transcription start sites and nucleosome occupancy was reported to correlate both with CpG density and the level of CpG methylation. Several studies...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lövkvist, Cecilia, Sneppen, Kim, Haerter, Jan O.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2018
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5771128/ https://www.ncbi.nlm.nih.gov/pubmed/29379519 http://dx.doi.org/10.3389/fgene.2017.00232

Ejemplares similares

Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states
por: Haerter, Jan O., et al.
Publicado: (2014)

DNA methylation in human epigenomes depends on local topology of CpG sites
por: Lövkvist, Cecilia, et al.
Publicado: (2016)

Links between DNA methylation and nucleosome occupancy in the human genome
por: Collings, Clayton K., et al.
Publicado: (2017)

Nanog, Oct4 and Tet1 interplay in establishing pluripotency
por: Olariu, Victor, et al.
Publicado: (2016)

Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus
por: Haerter, Jan O., et al.
Publicado: (2012)

NOMePlot: analysis of DNA methylation and nucleosome occupancy at the single molecule
por: Requena, Francisco, et al.
Publicado: (2019)

An effect of DNA sequence on nucleosome occupancy and removal
por: Wang, Xin, et al.
Publicado: (2011)

Food Web Assembly Rules for Generalized Lotka-Volterra Equations
por: Haerter, Jan O., et al.
Publicado: (2016)

DNA Double Strand Break Repair and Its Control by Nucleosome Remodeling
por: Karl, Leonhard Andreas, et al.
Publicado: (2022)

Histone Modifications, Internucleosome Dynamics, and DNA Stresses: How They Cooperate to “Functionalize” Nucleosomes
por: Krajewski, Wladyslaw A.
Publicado: (2022)

Genome-wide nucleosome occupancy and DNA methylation profiling of four human cell lines
por: Statham, Aaron L., et al.
Publicado: (2014)

Stochastic Variation in DNA Methylation Modulates Nucleosome Occupancy and Alternative Splicing in Arabidopsis thaliana
por: Jabre, Ibtissam, et al.
Publicado: (2022)

DNA methylation determines nucleosome occupancy in the 5′-CpG islands of tumor suppressor genes
por: Portela, A, et al.
Publicado: (2013)

Increase in DNA Damage by MYCN Knockdown Through Regulating Nucleosome Organization and Chromatin State in Neuroblastoma
por: Hu, Xinjie, et al.
Publicado: (2019)

Structural Features of the Nucleosomal DNA Modulate the Functional Binding of a Transcription Factor and Productive Transcription
por: Vinayachandran, Vinesh, et al.
Publicado: (2022)

Global nucleosome occupancy in yeast
por: Bernstein, Bradley E, et al.
Publicado: (2004)

Characterization of Dnmt1 Binding and DNA Methylation on Nucleosomes and Nucleosomal Arrays
por: Schrader, Anna, et al.
Publicado: (2015)

Effects of DNA methylation on nucleosome stability
por: Collings, Clayton K., et al.
Publicado: (2013)

DNA Methylation Regulated Nucleosome Dynamics
por: Jimenez-Useche, Isabel, et al.
Publicado: (2013)

Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy
por: Lubliner, Shai, et al.
Publicado: (2009)

Preferential Nucleosome Occupancy at High Values of DNA Helical Rise
por: Pedone, Francesco, et al.
Publicado: (2012)

Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development
por: Teif, Vladimir B., et al.
Publicado: (2014)

Nucleosome deposition and DNA methylation at coding region boundaries
por: Choi, Jung Kyoon, et al.
Publicado: (2009)

Exploring genome wide bisulfite sequencing for DNA methylation analysis in livestock: a technical assessment
por: Doherty, Rachael, et al.
Publicado: (2014)

Ultrasensitive gene regulation by positive feedback loops in nucleosome modification
por: Sneppen, Kim, et al.
Publicado: (2008)

Widespread plasticity in CTCF occupancy linked to DNA methylation
por: Wang, Hao, et al.
Publicado: (2012)

Correlations between DNA methylation levels and nucleosome enrichment in the human genome
por: Collings, Clayton K, et al.
Publicado: (2013)

DNA physical properties determine nucleosome occupancy from yeast to fly
por: Miele, Vincent, et al.
Publicado: (2008)

Nucleosomes protect DNA from DNA methylation in vivo and in vitro
por: Felle, Max, et al.
Publicado: (2011)

Generation of Native Chromatin Immunoprecipitation Sequencing Libraries for Nucleosome Density Analysis
por: Lorzadeh, Alireza, et al.
Publicado: (2017)

Catching Nucleosome by Its Decorated Tails Determines Its Functional States
por: Sehrawat, Parveen, et al.
Publicado: (2022)

Methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data
por: Knight, Parker, et al.
Publicado: (2021)

Exploring the Link Between Additive Heritability and Prediction Accuracy From a Ridge Regression Perspective
por: Frouin, Arthur, et al.
Publicado: (2020)

Genome wide analysis of DNA methylation and nucleosome positioning
por: Jones, Peter A
Publicado: (2013)

Cigarette smoking and DNA methylation
por: Lee, Ken W. K., et al.
Publicado: (2013)

Associations Between Behavioral Effects of Bisphenol A and DNA Methylation in Zebrafish Embryos
por: Olsvik, Pål A., et al.
Publicado: (2019)

Ethnic and Adipose Depot Specific Associations Between DNA Methylation and Metabolic Risk
por: Pheiffer, Carmen, et al.
Publicado: (2020)

Investigating Different DNA Methylation Patterns at the Resolution of Methylation Haplotypes
por: Peng, Xiaoqing, et al.
Publicado: (2021)

DNA Methylation Cancer Biomarkers: Translation to the Clinic
por: Locke, Warwick J., et al.
Publicado: (2019)

Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA
por: Osakabe, Akihisa, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_uu0f6qcaduuql5c379svmjuo2v