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Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma
Next-generation sequencing (NGS) has enabled comprehensive detection of genomic alterations in lung cancer. Ethnic differences may play a critical role in the efficacy of targeted therapies. The aim of this study was to identify and compare genomic alterations of lung adenocarcinoma between Japanese...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5772517/ https://www.ncbi.nlm.nih.gov/pubmed/29343775 http://dx.doi.org/10.1038/s41598-017-18560-y |
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author | Sato, Seijiro Nagahashi, Masayuki Koike, Terumoto Ichikawa, Hiroshi Shimada, Yoshifumi Watanabe, Satoshi Kikuchi, Toshiaki Takada, Kazuki Nakanishi, Ryota Oki, Eiji Okamoto, Tatsuro Akazawa, Kouhei Lyle, Stephen Ling, Yiwei Takabe, Kazuaki Okuda, Shujiro Wakai, Toshifumi Tsuchida, Masanori |
author_facet | Sato, Seijiro Nagahashi, Masayuki Koike, Terumoto Ichikawa, Hiroshi Shimada, Yoshifumi Watanabe, Satoshi Kikuchi, Toshiaki Takada, Kazuki Nakanishi, Ryota Oki, Eiji Okamoto, Tatsuro Akazawa, Kouhei Lyle, Stephen Ling, Yiwei Takabe, Kazuaki Okuda, Shujiro Wakai, Toshifumi Tsuchida, Masanori |
author_sort | Sato, Seijiro |
collection | PubMed |
description | Next-generation sequencing (NGS) has enabled comprehensive detection of genomic alterations in lung cancer. Ethnic differences may play a critical role in the efficacy of targeted therapies. The aim of this study was to identify and compare genomic alterations of lung adenocarcinoma between Japanese patients and the Cancer Genome Atlas (TCGA), which majority of patients are from the US. We also aimed to examine prognostic impact of additional genomic alterations in patients harboring EGFR mutations. Genomic alterations were determined in Japanese patients with lung adenocarcinoma (N = 100) using NGS-based sequencing of 415 known cancer genes, and correlated with clinical outcome. EGFR active mutations, i.e., those involving exon 19 deletion or an L858R point mutation, were seen in 43% of patients. Some differences in driver gene mutation prevalence were observed between the Japanese cohort described in the present study and the TCGA. Japanese cohort had significantly more genomic alterations in cell cycle pathway, i.e., CDKN2B and RB1 than TCGA. Concurrent mutations, in genes such as CDKN2B or RB1, were associated with worse clinical outcome in patients with EGFR active mutations. Our data support the utility of comprehensive sequencing to detect concurrent genomic variations that may affect clinical outcomes in this disease. |
format | Online Article Text |
id | pubmed-5772517 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57725172018-01-26 Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma Sato, Seijiro Nagahashi, Masayuki Koike, Terumoto Ichikawa, Hiroshi Shimada, Yoshifumi Watanabe, Satoshi Kikuchi, Toshiaki Takada, Kazuki Nakanishi, Ryota Oki, Eiji Okamoto, Tatsuro Akazawa, Kouhei Lyle, Stephen Ling, Yiwei Takabe, Kazuaki Okuda, Shujiro Wakai, Toshifumi Tsuchida, Masanori Sci Rep Article Next-generation sequencing (NGS) has enabled comprehensive detection of genomic alterations in lung cancer. Ethnic differences may play a critical role in the efficacy of targeted therapies. The aim of this study was to identify and compare genomic alterations of lung adenocarcinoma between Japanese patients and the Cancer Genome Atlas (TCGA), which majority of patients are from the US. We also aimed to examine prognostic impact of additional genomic alterations in patients harboring EGFR mutations. Genomic alterations were determined in Japanese patients with lung adenocarcinoma (N = 100) using NGS-based sequencing of 415 known cancer genes, and correlated with clinical outcome. EGFR active mutations, i.e., those involving exon 19 deletion or an L858R point mutation, were seen in 43% of patients. Some differences in driver gene mutation prevalence were observed between the Japanese cohort described in the present study and the TCGA. Japanese cohort had significantly more genomic alterations in cell cycle pathway, i.e., CDKN2B and RB1 than TCGA. Concurrent mutations, in genes such as CDKN2B or RB1, were associated with worse clinical outcome in patients with EGFR active mutations. Our data support the utility of comprehensive sequencing to detect concurrent genomic variations that may affect clinical outcomes in this disease. Nature Publishing Group UK 2018-01-17 /pmc/articles/PMC5772517/ /pubmed/29343775 http://dx.doi.org/10.1038/s41598-017-18560-y Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Sato, Seijiro Nagahashi, Masayuki Koike, Terumoto Ichikawa, Hiroshi Shimada, Yoshifumi Watanabe, Satoshi Kikuchi, Toshiaki Takada, Kazuki Nakanishi, Ryota Oki, Eiji Okamoto, Tatsuro Akazawa, Kouhei Lyle, Stephen Ling, Yiwei Takabe, Kazuaki Okuda, Shujiro Wakai, Toshifumi Tsuchida, Masanori Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma |
title | Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma |
title_full | Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma |
title_fullStr | Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma |
title_full_unstemmed | Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma |
title_short | Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma |
title_sort | impact of concurrent genomic alterations detected by comprehensive genomic sequencing on clinical outcomes in east-asian patients with egfr-mutated lung adenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5772517/ https://www.ncbi.nlm.nih.gov/pubmed/29343775 http://dx.doi.org/10.1038/s41598-017-18560-y |
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